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-rw-r--r--bh20sequploader/bh20seq-schema.yml12
1 files changed, 9 insertions, 3 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index c48ebce..64008f2 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -78,24 +78,26 @@ $graph:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001479
+ _type: "@id"
specimen_source2:
doc: Method how the specimen was derived as NCIT IRI, e.g. http://purl.obolibrary.org/obo/NCIT_C155835 (=throat swabb)
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001479
+ _type: "@id"
collection_date:
doc: Date when the sample was taken
- type: string?
+ type: string
jsonldPredicate:
_id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25164
collection_location:
doc: Geographical location where the sample was collected as wikidata reference, e.g. http://www.wikidata.org/entity/Q148 (China)
- type: string?
+ type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/GAZ_00000448
_type: "@id"
sample_storage_conditions:
- doc: Information aboout storage of a specified type, e.g. frozen specimen, paraffin, fresh ....
+ doc: Information about storage of a specified type, e.g. frozen specimen, paraffin, fresh ....
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001472
@@ -138,11 +140,13 @@ $graph:
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
+ _type: "@id"
sample_sequencing_technology2:
doc: Technology that was used to sequence this sample (e.g Sanger, Nanopor MiniION)
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
+ _type: "@id"
sequence_assembly_method:
doc: Protocol which provides instructions on the alignment of sequencing reads to reference genome
type: string?
@@ -210,6 +214,8 @@ $graph:
type: string?
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000115
+ _type: "@id"
+ noLinkCheck: true
- name: MainSchema
type: record