diff options
Diffstat (limited to 'bh20sequploader')
| -rw-r--r-- | bh20sequploader/qc_metadata.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/bh20sequploader/qc_metadata.py b/bh20sequploader/qc_metadata.py index 2b57991..3e1e471 100644 --- a/bh20sequploader/qc_metadata.py +++ b/bh20sequploader/qc_metadata.py @@ -27,6 +27,10 @@ def qc_metadata(metadatafile): g = schema_salad.jsonld_context.makerdf("workflow", doc, document_loader.ctx) rslt, reason = evaluate(g, shex, doc["id"], "https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#submissionShape") + # As part of QC make sure serialization works too, this will raise + # an exception if there are invalid URIs. + g.serialize(format="ntriples") + if not rslt: raise Exception(reason) |