diff options
Diffstat (limited to 'bh20sequploader/qc_metadata.py')
| -rw-r--r-- | bh20sequploader/qc_metadata.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/bh20sequploader/qc_metadata.py b/bh20sequploader/qc_metadata.py index fbfd286..9122ace 100644 --- a/bh20sequploader/qc_metadata.py +++ b/bh20sequploader/qc_metadata.py @@ -8,7 +8,9 @@ import traceback from rdflib import Graph, Namespace from pyshex.evaluate import evaluate + def qc_metadata(metadatafile): + log = logging.getLogger(__name__ ) schema_resource = pkg_resources.resource_stream(__name__, "bh20seq-schema.yml") cache = {"https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-schema.yml": schema_resource.read().decode("utf-8")} (document_loader, @@ -28,10 +30,11 @@ def qc_metadata(metadatafile): rslt, reason = evaluate(g, shex, doc["id"], "https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#submissionShape") if not rslt: + log.debug(reason) print(reason) return rslt except Exception as e: traceback.print_exc() - logging.warn(e) + log.warn(e) return False |