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Diffstat (limited to 'bh20sequploader/main.py')
| -rw-r--r-- | bh20sequploader/main.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index f89b458..ea0fa70 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -49,7 +49,7 @@ sequence for enough overlap with the reference genome failed = True except Exception as e: log.exception("Failed metadata QC") - failed = True + failed = True # continue with the FASTA checker target = [] try: @@ -64,13 +64,14 @@ sequence for enough overlap with the reference genome target[1] = ("reads_2."+target[1][0][6:], target[1][1], target[1][2]) if do_qc and target[0][2] == 'text/fasta' and sample_id != target[0][1]: - raise ValueError("The sample_id field in the metadata must be the same as the FASTA header") + raise ValueError(f"The sample_id field in the metadata ({sample_id}) must be the same as the FASTA header ({target[0][1]})") except Exception as e: log.exception("Failed sequence QC") failed = True if failed: + log.debug("Bailing out!") exit(1) return target |