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-rw-r--r--bh20sequploader/bh20seq-schema.yml15
1 files changed, 8 insertions, 7 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 2d2e4c9..a901be0 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -23,11 +23,12 @@ $graph:
type: string
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000115
- host_common_name:
- doc: Text label for the host species (e.g. homo sapiens)
- type: string?
- jsonldPredicate:
- _id: http://purl.obolibrary.org/obo/NOMEN_0000037
+# Removed_common_name. Not necessary since we turned species into IRI
+# host_common_name:
+# doc: Text label for the host species (e.g. homo sapiens)
+# type: string?
+# jsonldPredicate:
+# _id: http://purl.obolibrary.org/obo/NOMEN_0000037
host_sex:
doc: Sex of the host as define in NCIT, IRI expected (http://purl.obolibrary.org/obo/C20197 (Male), http://purl.obolibrary.org/obo/NCIT_C27993 (Female) or unkown (http://purl.obolibrary.org/obo/NCIT_C17998))
type: string
@@ -120,7 +121,7 @@ $graph:
fields:
virus_species:
doc: The name of a taxon from the NCBI taxonomy database
- type: string?
+ type: string
jsonldPredicate:
_id: http://edamontology.org/data_1875
_type: "@id"
@@ -145,7 +146,7 @@ $graph:
_id: http://www.ebi.ac.uk/efo/EFO_0002699
sequencing_coverage:
doc: Sequence coverage defined as the average number of reads representing a given nucleotide (e.g. 100x)
- type: string?
+ type: int?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/FLU_0000848