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-rw-r--r--bh20sequploader/bh20seq-schema.yml11
1 files changed, 10 insertions, 1 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 64008f2..982447c 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -18,6 +18,7 @@ $graph:
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000532
_type: "@id"
+ identity: true
host_id:
doc: Identifer for the host. If you submit multiple samples from the same host, use the same host_id for those samples
type: string
@@ -29,6 +30,7 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000047
_type: "@id"
+ identity: true
host_age:
doc: Age of the host as number (e.g. 50)
type: int?
@@ -40,6 +42,7 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/NCIT_C42574
_type: "@id"
+ identity: true
host_health_status:
doc: A condition or state at a particular time
type: string?
@@ -79,12 +82,14 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001479
_type: "@id"
+ identity: true
specimen_source2:
doc: Method how the specimen was derived as NCIT IRI, e.g. http://purl.obolibrary.org/obo/NCIT_C155835 (=throat swabb)
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001479
_type: "@id"
+ identity: true
collection_date:
doc: Date when the sample was taken
type: string
@@ -96,6 +101,7 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/GAZ_00000448
_type: "@id"
+ identity: true
sample_storage_conditions:
doc: Information about storage of a specified type, e.g. frozen specimen, paraffin, fresh ....
type: string?
@@ -126,6 +132,7 @@ $graph:
jsonldPredicate:
_id: http://edamontology.org/data_1875
_type: "@id"
+ identity: true
virus_strain:
doc: Name of the virus strain
type: string?
@@ -141,12 +148,14 @@ $graph:
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
_type: "@id"
+ identity: true
sample_sequencing_technology2:
doc: Technology that was used to sequence this sample (e.g Sanger, Nanopor MiniION)
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
_type: "@id"
+ identity: true
sequence_assembly_method:
doc: Protocol which provides instructions on the alignment of sequencing reads to reference genome
type: string?
@@ -215,7 +224,7 @@ $graph:
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000115
_type: "@id"
- noLinkCheck: true
+ identity: true
- name: MainSchema
type: record