diff options
Diffstat (limited to 'bh20sequploader/bh20seq-schema.yml')
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 24 |
1 files changed, 13 insertions, 11 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 2b36e99..bc652a6 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -191,16 +191,16 @@ $graph: _id: http://purl.obolibrary.org/obo/OBI_0600047 _type: "@id" noLinkCheck: true + assembly_method: + doc: Assembly method refers to how the reads were assembled into contigs for which either a de novo (http://purl.obolibrary.org/obo/GENEPIO_0001628) or mapping/reference based (http://purl.obolibrary.org/obo/GENEPIO_0002028) strategy is used. + type: string + jsonldPredicate: + _id: http://purl.obolibrary.org/obo/GENEPIO_0000090 alignment_protocol: doc: Field for additional information on the pipeline applied to obtain the assembly type: string? jsonldPredicate: _id: http://www.ebi.ac.uk/efo/EFO_0004917 - assembly_method: - doc: Assembly method refers to how the reads were assembled into contigs for which either a de novo (http://purl.obolibrary.org/obo/GENEPIO_0001628) or mapping/reference based (http://purl.obolibrary.org/obo/GENEPIO_0002028) strategy is used. - type: string? - jsonldPredicate: - _id: http://purl.obolibrary.org/obo/GENEPIO_0000090 sequencing_coverage: doc: Sequence coverage defined as the average number of reads representing a given nucleotide (e.g. [100]) - if multiple technologies were used multiple float values can be submitted e.g. [100, 20] type: double[]? @@ -231,23 +231,25 @@ $graph: jsonldPredicate: _id: http://semanticscience.org/resource/SIO_000172 originating_lab: - doc: Name of the laboratory that took the sample + doc: Laboratory where the sample originates from sample type: string? jsonldPredicate: _id: http://purl.obolibrary.org/obo/NCIT_C37984 lab_address: - doc: Address of the laboratory where the sample was taken + doc: Address of the laboratory type: string? jsonldPredicate: - _id: http://purl.obolibrary.org/obo/NCIT_C37900 - provider_sample_id: + _id: http://purl.obolibrary.org/obo/NCIT_C25407 + provider: + doc: Provider of the sample type: string? jsonldPredicate: - _id: http://www.ebi.ac.uk/efo/EFO_0001741 + _id: http://purl.obolibrary.org/obo/NCIT_C37900 submitter_sample_id: + doc: Identifer given to the sample by the submitter type: string? jsonldPredicate: - _id: http://purl.obolibrary.org/obo/NCIT_C42781 + _id: http://purl.obolibrary.org/obo/NCIT_C25364 publication: doc: Reference to publication of this sample (e.g. DOI, pubmed ID, ...) type: string? |