diff options
Diffstat (limited to 'bh20sequploader/bh20seq-options.yml')
| -rw-r--r-- | bh20sequploader/bh20seq-options.yml | 22 |
1 files changed, 17 insertions, 5 deletions
diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml index 4c1d15c..104ed6c 100644 --- a/bh20sequploader/bh20seq-options.yml +++ b/bh20sequploader/bh20seq-options.yml @@ -17,11 +17,11 @@ host_sex: host_health_status: healthy: http://purl.obolibrary.org/obo/NCIT_C115935 - asymptomatic: http://purl.obolibrary.org/obo/NCIT_C3833 - sympotmatic: http://purl.obolibrary.org/obo/NCIT_C25269 - admitted to hospital: http://purl.obolibrary.org/obo/GENEPIO_0002020 - discharged from hospital: http://purl.obolibrary.org/obo/GENEPIO_0001849 - dead: http://purl.obolibrary.org/obo/NCIT_C28554 + asymptomatic: http://purl.obolibrary.org/obo/NCIT_C3833 + symptomatic: http://purl.obolibrary.org/obo/NCIT_C25269 + admitted to hospital: http://purl.obolibrary.org/obo/GENEPIO_0002020 + discharged from hospital: http://purl.obolibrary.org/obo/GENEPIO_0001849 + dead: http://purl.obolibrary.org/obo/NCIT_C28554 alive: http://purl.obolibrary.org/obo/NCIT_C37987 sample_sequencing_technology: @@ -47,6 +47,18 @@ sample_sequencing_technology2: Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818 Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641 +sample_sequencing_technology3: + Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173 + Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566 + Illumina HiSeq X: http://www.ebi.ac.uk/efo/EFO_0008567 + Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205 + Illumina: http://purl.obolibrary.org/obo/OBI_0000759 + IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894 + Ion Semiconductor Sequencing: http://purl.obolibraryorg/obo/NCIT_C125894 + Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632 + Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818 + Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641 + specimen_source: nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831 oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835 |