diff options
| -rw-r--r-- | bh20simplewebuploader/main.py | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py index 693e4fd..f5324a5 100644 --- a/bh20simplewebuploader/main.py +++ b/bh20simplewebuploader/main.py @@ -10,6 +10,11 @@ import yaml import urllib.request from flask import Flask, request, redirect, send_file, send_from_directory, render_template +import os.path + +if not os.path.isfile('bh20sequploader/mainx.py'): + print("WARNING: run FLASK from the root of the source repository!", file=sys.stderr) + app = Flask(__name__, static_url_path='/static', static_folder='static') # Limit file upload size. We shouldn't be working with anything over 1 MB; these are small genomes. @@ -252,7 +257,9 @@ def receive_files(): # Try and upload files to Arvados using the sequence uploader CLI - result = subprocess.run(['python3','bh20sequploader/main.py', fasta_dest, metadata_dest], + cmd = ['python3','bh20sequploader/main.py', fasta_dest, metadata_dest] + print(" ".join(cmd),file=sys.stderr) + result = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE) if result.returncode != 0: |