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-rw-r--r--bh20simplewebuploader/templates/blurb.html10
-rw-r--r--bh20simplewebuploader/templates/footer.html6
-rw-r--r--bh20simplewebuploader/templates/form.html41
3 files changed, 40 insertions, 17 deletions
diff --git a/bh20simplewebuploader/templates/blurb.html b/bh20simplewebuploader/templates/blurb.html
index 7bfe2ab..80fd384 100644
--- a/bh20simplewebuploader/templates/blurb.html
+++ b/bh20simplewebuploader/templates/blurb.html
@@ -7,4 +7,14 @@
and, perhaps most importantly, providing standardised workflows that
get triggered on upload, so that results are immediately available
in standardised data formats.
+
+ Your uploaded sequence will automatically be processed and
+ incorporated into the public pangenome with metadata using worklows
+ from the High Performance Open Biology Lab
+ defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. Importantly, all
+ data is published under
+ a <a href="https://creativecommons.org/">Creative
+ Commons license</a> (CC0 or CC-BY-4.0). Anyone can take the
+ published (GFA/RDF/FASTA) data and use it for
+ further processing.
</p>
diff --git a/bh20simplewebuploader/templates/footer.html b/bh20simplewebuploader/templates/footer.html
index e3923a7..0218278 100644
--- a/bh20simplewebuploader/templates/footer.html
+++ b/bh20simplewebuploader/templates/footer.html
@@ -6,9 +6,9 @@
<h1>ABOUT</h1>
{% include 'blurb.html' %}
<p>
- The repository will be maintained and expanded for the
- duration of the pandemic. To contribute data simply upload it!
- To contribute code and/or workflows see
+ The repository will be maintained and expanded for the
+ duration of the pandemic (and beyond). To contribute data
+ simply upload it! To contribute code and/or workflows see
the <a href="https://github.com/arvados/bh20-seq-resource">project
repository</a>. For more information see
the <a href="/about">FAQ</a> and
diff --git a/bh20simplewebuploader/templates/form.html b/bh20simplewebuploader/templates/form.html
index 3a1b03b..909c393 100644
--- a/bh20simplewebuploader/templates/form.html
+++ b/bh20simplewebuploader/templates/form.html
@@ -9,25 +9,38 @@
<form action="/submit" method="POST" enctype="multipart/form-data" id="main_form" class="grid-container">
<div class="intro">
<p>
- Upload your SARS-CoV-2 sequence (FASTA or FASTQ formats) with metadata (JSONLD) to the <a href="https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca">public sequence resource</a>. The upload will trigger a
- recompute with all available sequences into a Pangenome
- available for
- <a href="https://collections.lugli.arvadosapi.com/c=lugli-4zz18-z513nlpqm03hpca/">download</a>!
+ Make your sequence
+ data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload
+ your SARS-CoV-2 sequence (FASTA or FASTQ
+ formats) with metadata (JSONLD) to
+ the <a href="/about">public sequence
+ resource</a>. The upload will trigger a
+ recompute with all available sequences into a
+ Pangenome available for
+ <a href="/download">download</a>!
</p>
<p>
- Your uploaded sequence will automatically be processed
- and incorporated into the public pangenome with
- metadata using worklows from the High Performance Open Biology Lab defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All data is published under
+ Your uploaded sequence will automatically be
+ processed and incorporated into the public
+ pangenome with metadata using worklows from
+ the High Performance Open Biology Lab
+ defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All
+ data is published under
a <a href="https://creativecommons.org/licenses/by/4.0/">Creative
- Commons 4.0 attribution license</a> (CC-BY-4.0). You
- can take the published (GFA/RDF/FASTA) data and store it in
- a triple store for further processing. We also plan to
- combine identifiers with clinical data stored securely at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>.
- A free command line version of the uploader can be
- installed from <a href="https://github.com/arvados/bh20-seq-resource">source</a>.
+ Commons license</a> You can take the published
+ (GFA/RDF/FASTA) data and store it in a triple
+ store for further processing. Clinical
+ data can be stored
+ securely
+ at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>.
</p>
<p>
- Note that form fields contain web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">onthology URI's</a> for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a> and machine readable metadata. For examples of use, see the <a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part1.org">BLOG</a>.
+ Note that form fields contain
+ web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">onthology
+ URI's</a>
+ for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a>
+ and machine readable metadata. For examples of
+ use, see the <a href="/blog">BLOG</a>.
</p>
</div>