diff options
| -rw-r--r-- | workflows/pangenome-generate/from_sparql.cwl | 7 |
1 files changed, 6 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/from_sparql.cwl b/workflows/pangenome-generate/from_sparql.cwl index ab85656..380b59c 100644 --- a/workflows/pangenome-generate/from_sparql.cwl +++ b/workflows/pangenome-generate/from_sparql.cwl @@ -1,5 +1,7 @@ cwlVersion: v1.1 class: CommandLineTool +$namespaces: + arv: "http://arvados.org/cwl#" requirements: DockerRequirement: dockerFile: | @@ -7,7 +9,10 @@ requirements: RUN apt-get update && apt-get -yq --no-install-recommends install samtools python3-rdflib dockerImageId: rdflib-and-samtools ResourceRequirement: - ramMin: 1024 + ramMin: 768 + arv:RuntimeConstraints: + keep_cache: 2048 + outputDirType: keep_output_dir inputs: script: type: File |