diff options
| -rw-r--r-- | bh20sequploader/bh20seq-schema.yml | 9 | ||||
| -rw-r--r-- | bh20sequploader/bh20seq-shex.rdf | 24 | ||||
| -rw-r--r-- | doc/blog/using-covid-19-pubseq-part5.org | 2 |
3 files changed, 26 insertions, 9 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 29ac22c..c690e8a 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -23,16 +23,21 @@ $graph: type: string? jsonldPredicate: _id: http://semanticscience.org/resource/SIO_001167 + attribution_name: + doc: Attribution NAME related to data license + type: string? + jsonldPredicate: + _id: https://creativecommons.org/ns#attributionName attribution_url: doc: Attribution URL related to data license type: string? jsonldPredicate: - _id: https://creativecommons.org/ns#Work + _id: https://creativecommons.org/ns#attributionURL attribution_source: doc: Attribution source URL related to data license type: string? jsonldPredicate: - _id: https://creativecommons.org/ns#Work + _id: https://creativecommons.org/ns#attributionSource - name: hostSchema type: record diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf index 965229c..c48267d 100644 --- a/bh20sequploader/bh20seq-shex.rdf +++ b/bh20sequploader/bh20seq-shex.rdf @@ -1,6 +1,7 @@ PREFIX : <https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#> PREFIX MainSchema: <http://biohackathon.org/bh20-seq-schema#MainSchema/> PREFIX hostSchema: <http://biohackathon.org/bh20-seq-schema#hostSchema/> +PREFIX cc: <http://creativecommons.org/ns#> PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> PREFIX obo: <http://purl.obolibrary.org/obo/> PREFIX sio: <http://semanticscience.org/resource/> @@ -15,10 +16,11 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> MainSchema:submitter @:submitterShape ; MainSchema:technology @:technologyShape ; MainSchema:virus @:virusShape; + MainSchema:license @:licenseShape; } :hostShape { - efo:EFO_0000532 [ obo:NCBITaxon_~ ] ; + efo:EFO_0000532 [ obo:NCBITaxon_~ ] ; sio:SIO_000115 xsd:string ?; obo:PATO_0000047 [ obo:PATO_0000384 obo:PATO_0000383 obo:PATO_0001340] ?; obo:PATO_0000011 xsd:integer ?; @@ -32,14 +34,14 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> :sampleShape { sio:SIO_000115 xsd:string; - evs:C25164 xsd:string; - obo:GAZ_00000448 [wikidata:~] ; + evs:C25164 xsd:string; + obo:GAZ_00000448 [wikidata:~] ; obo:OBI_0001895 xsd:string ?; obo:NCIT_C41206 xsd:string ?; obo:OBI_0001479 IRI {0,2}; obo:OBI_0001472 xsd:string ?; sio:SIO_001167 xsd:string ?; - edam:data_2091 IRI {0,3}; + edam:data_2091 IRI {0,3}; } :submitterShape { @@ -47,7 +49,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> sio:SIO_000116 xsd:string *; sio:SIO_000172 xsd:string ?; obo:NCIT_C37984 xsd:string ?; - obo:NCIT_C37900 xsd:string ?; + obo:NCIT_C37900 xsd:string ?; efo:EFO_0001741 xsd:string ?; obo:NCIT_C42781 xsd:string ?; obo:NCIT_C19026 xsd:string ?; @@ -63,6 +65,14 @@ PREFIX wikidata: <http://www.wikidata.org/entity/> } :virusShape{ - edam:data_1875 [ obo:NCBITaxon_~ ] ; - sio:SIO_010055 xsd:string ?; + edam:data_1875 [ obo:NCBITaxon_~ ] ; + sio:SIO_010055 xsd:string ?; } + +:licenseShape{ + cc:License xsd:string; + sio:SIO_001167 xsd:string ?; + cc:attributionName xsd:string ?; + cc:attributionURL xsd:string ?; + cc:attributionSource xsd:string ?; +}
\ No newline at end of file diff --git a/doc/blog/using-covid-19-pubseq-part5.org b/doc/blog/using-covid-19-pubseq-part5.org index aa06d5e..cb11f43 100644 --- a/doc/blog/using-covid-19-pubseq-part5.org +++ b/doc/blog/using-covid-19-pubseq-part5.org @@ -125,4 +125,6 @@ To add the new fields to the form we have to modify it a little. If we go to the upload form we need to add the license box. The schema is loaded in [[https://github.com/arvados/bh20-seq-resource/blob/a0c8ebd57b875f265e8b0efec4abfaf892eb6c45/bh20simplewebuploader/main.py#L229][main.py]] in the 'generate_form' function. +With this [[https://github.com/arvados/bh20-seq-resource/commit/b9691c7deae30bd6422fb7b0681572b7b6f78ae3][patch]] the website adds the license input fields on the form. + /Note: work in progress/ |