diff options
| -rw-r--r-- | bh20simplewebuploader/main.py | 19 | ||||
| -rw-r--r-- | bh20simplewebuploader/static/main.js | 4 | ||||
| -rw-r--r-- | bh20simplewebuploader/templates/demo.html | 2 |
3 files changed, 24 insertions, 1 deletions
diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py index 9823e11..d6e5249 100644 --- a/bh20simplewebuploader/main.py +++ b/bh20simplewebuploader/main.py @@ -1387,3 +1387,22 @@ PREFIX wiki: <http://www.wikidata.org/prop/direct/>""" [{'continent_label': x['continent_label']['value'], 'specimen_source_label': x['specimen_source_label']['value'], 'seqCount': x['seqCount']['value']} for x in result]) + + +@app.route('/api/demoGetSampleSchema', methods=['GET']) +def demoGetSampleSchema(): + prefix = """PREFIX bh:<http://biohackathon.org/bh20-seq-schema#MainSchema/> +PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>""" + query="""Select distinct ?key ?key_label WHERE { + ?seq bh:sample [?key ?value ] . + ?key rdfs:label ?key_label +} +""" + + description = "Show the sample meta data schema. Displays the keys as well as their labels. By simple replacing bh:sample e.g. bh:technology the user could retrieve other parts of the meta data schema" + payload = {'query': prefix + query, 'format': 'json'} + r = requests.get(sparqlURL, params=payload) + result = r.json()['results']['bindings'] + return jsonify([{'description': description}, {'prefix': prefix}, {'query': query}], + [{'key': x['key']['value'], + 'key_label': x['key_label']['value']} for x in result]) diff --git a/bh20simplewebuploader/static/main.js b/bh20simplewebuploader/static/main.js index 8baf635..d061f8e 100644 --- a/bh20simplewebuploader/static/main.js +++ b/bh20simplewebuploader/static/main.js @@ -254,6 +254,10 @@ let demoGetContinentSpecimentSeqCount = () => { demofetchHTMLTable("/api/demoGetContinentSpecimentSeqCount") } +let demoGetSampleSchema= () => { + demofetchHTMLTable("/api/demoGetSampleSchema") +} + ////****** SPARQL playground functions ***************//// diff --git a/bh20simplewebuploader/templates/demo.html b/bh20simplewebuploader/templates/demo.html index dc6281d..8010a1b 100644 --- a/bh20simplewebuploader/templates/demo.html +++ b/bh20simplewebuploader/templates/demo.html @@ -35,7 +35,7 @@ <button class="button" onclick="demoGetSeqByAgeGender()">Get Sequence by age and gender</button> <button class="button" onclick="demoGetNYsamples()">Get all NY samples</button> <button class="button" onclick="demoGetContinentSpecimentSeqCount()">Sequence count by continent/specimen_source</button> - + <button class="button" onclick="demoGetSampleSchema()">Show sample meta data schema</button> |