aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
-rw-r--r--doc/INSTALL.md9
1 files changed, 8 insertions, 1 deletions
diff --git a/doc/INSTALL.md b/doc/INSTALL.md
index 8f4b2f0..d9948e6 100644
--- a/doc/INSTALL.md
+++ b/doc/INSTALL.md
@@ -1,3 +1,5 @@
+#+OPTIONS: ^:nil
+
# INSTALLATION
Other options for running this tool.
@@ -29,12 +31,15 @@ arvados-python-client-2.0.1 ciso8601-2.1.3 future-0.18.2 google-api-python-clien
3. Run the tool directly with
```sh
-guix environment guix --ad-hoc git python openssl python-pycurl python-magic nss-certs python-pyshex -- python3 bh20sequploader/main.py example/sequence.fasta example/metadata.yaml
+guix environment guix --ad-hoc git python openssl python-pycurl python-magic nss-certs python-pyshex -- python3 bh20sequploader/main.py example/sequence.fasta example/maximum_metadata_example.yaml
```
Note that python-pyshex is packaged in
http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics
+so you'll need it to the GUIX_PACKAGE_PATH - see the README in that
+repository.
+
### Using the Web Uploader
To run the web uploader in a GNU Guix environment/container
@@ -50,3 +55,5 @@ guix environment guix --ad-hoc git python python-flask python-pyyaml python-pycu
```
WIP: add gunicorn container
+
+Note: see above on GUIX_PACKAGE_PATH.