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-rw-r--r--bh20sequploader/bh20seq-schema.yml9
-rw-r--r--bh20sequploader/bh20seq-shex.rdf24
-rw-r--r--doc/blog/using-covid-19-pubseq-part5.org2
3 files changed, 26 insertions, 9 deletions
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 29ac22c..c690e8a 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -23,16 +23,21 @@ $graph:
type: string?
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_001167
+ attribution_name:
+ doc: Attribution NAME related to data license
+ type: string?
+ jsonldPredicate:
+ _id: https://creativecommons.org/ns#attributionName
attribution_url:
doc: Attribution URL related to data license
type: string?
jsonldPredicate:
- _id: https://creativecommons.org/ns#Work
+ _id: https://creativecommons.org/ns#attributionURL
attribution_source:
doc: Attribution source URL related to data license
type: string?
jsonldPredicate:
- _id: https://creativecommons.org/ns#Work
+ _id: https://creativecommons.org/ns#attributionSource
- name: hostSchema
type: record
diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf
index 965229c..c48267d 100644
--- a/bh20sequploader/bh20seq-shex.rdf
+++ b/bh20sequploader/bh20seq-shex.rdf
@@ -1,6 +1,7 @@
PREFIX : <https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#>
PREFIX MainSchema: <http://biohackathon.org/bh20-seq-schema#MainSchema/>
PREFIX hostSchema: <http://biohackathon.org/bh20-seq-schema#hostSchema/>
+PREFIX cc: <http://creativecommons.org/ns#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX sio: <http://semanticscience.org/resource/>
@@ -15,10 +16,11 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
MainSchema:submitter @:submitterShape ;
MainSchema:technology @:technologyShape ;
MainSchema:virus @:virusShape;
+ MainSchema:license @:licenseShape;
}
:hostShape {
- efo:EFO_0000532 [ obo:NCBITaxon_~ ] ;
+ efo:EFO_0000532 [ obo:NCBITaxon_~ ] ;
sio:SIO_000115 xsd:string ?;
obo:PATO_0000047 [ obo:PATO_0000384 obo:PATO_0000383 obo:PATO_0001340] ?;
obo:PATO_0000011 xsd:integer ?;
@@ -32,14 +34,14 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
:sampleShape {
sio:SIO_000115 xsd:string;
- evs:C25164 xsd:string;
- obo:GAZ_00000448 [wikidata:~] ;
+ evs:C25164 xsd:string;
+ obo:GAZ_00000448 [wikidata:~] ;
obo:OBI_0001895 xsd:string ?;
obo:NCIT_C41206 xsd:string ?;
obo:OBI_0001479 IRI {0,2};
obo:OBI_0001472 xsd:string ?;
sio:SIO_001167 xsd:string ?;
- edam:data_2091 IRI {0,3};
+ edam:data_2091 IRI {0,3};
}
:submitterShape {
@@ -47,7 +49,7 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
sio:SIO_000116 xsd:string *;
sio:SIO_000172 xsd:string ?;
obo:NCIT_C37984 xsd:string ?;
- obo:NCIT_C37900 xsd:string ?;
+ obo:NCIT_C37900 xsd:string ?;
efo:EFO_0001741 xsd:string ?;
obo:NCIT_C42781 xsd:string ?;
obo:NCIT_C19026 xsd:string ?;
@@ -63,6 +65,14 @@ PREFIX wikidata: <http://www.wikidata.org/entity/>
}
:virusShape{
- edam:data_1875 [ obo:NCBITaxon_~ ] ;
- sio:SIO_010055 xsd:string ?;
+ edam:data_1875 [ obo:NCBITaxon_~ ] ;
+ sio:SIO_010055 xsd:string ?;
}
+
+:licenseShape{
+ cc:License xsd:string;
+ sio:SIO_001167 xsd:string ?;
+ cc:attributionName xsd:string ?;
+ cc:attributionURL xsd:string ?;
+ cc:attributionSource xsd:string ?;
+} \ No newline at end of file
diff --git a/doc/blog/using-covid-19-pubseq-part5.org b/doc/blog/using-covid-19-pubseq-part5.org
index aa06d5e..cb11f43 100644
--- a/doc/blog/using-covid-19-pubseq-part5.org
+++ b/doc/blog/using-covid-19-pubseq-part5.org
@@ -125,4 +125,6 @@ To add the new fields to the form we have to modify it a little. If we
go to the upload form we need to add the license box. The schema is
loaded in [[https://github.com/arvados/bh20-seq-resource/blob/a0c8ebd57b875f265e8b0efec4abfaf892eb6c45/bh20simplewebuploader/main.py#L229][main.py]] in the 'generate_form' function.
+With this [[https://github.com/arvados/bh20-seq-resource/commit/b9691c7deae30bd6422fb7b0681572b7b6f78ae3][patch]] the website adds the license input fields on the form.
+
/Note: work in progress/