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-rw-r--r--LICENSE201
-rw-r--r--README.rst3
-rw-r--r--bh20sequploader/main.py2
-rw-r--r--bh20sequploader/main.py~2
-rw-r--r--gittaggers.py36
-rw-r--r--setup.py44
6 files changed, 288 insertions, 0 deletions
diff --git a/LICENSE b/LICENSE
new file mode 100644
index 0000000..8dada3e
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,201 @@
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diff --git a/README.rst b/README.rst
new file mode 100644
index 0000000..71ec67e
--- /dev/null
+++ b/README.rst
@@ -0,0 +1,3 @@
+==========================================
+Sequence uploader
+==========================================
diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py
new file mode 100644
index 0000000..e3095b2
--- /dev/null
+++ b/bh20sequploader/main.py
@@ -0,0 +1,2 @@
+def main():
+ print("hello world")
diff --git a/bh20sequploader/main.py~ b/bh20sequploader/main.py~
new file mode 100644
index 0000000..336e825
--- /dev/null
+++ b/bh20sequploader/main.py~
@@ -0,0 +1,2 @@
+def main():
+ pass
diff --git a/gittaggers.py b/gittaggers.py
new file mode 100644
index 0000000..e91cf0f
--- /dev/null
+++ b/gittaggers.py
@@ -0,0 +1,36 @@
+import subprocess
+import time
+import pkg_resources
+from setuptools.command.egg_info import egg_info
+
+SETUPTOOLS_VER = pkg_resources.get_distribution(
+ "setuptools").version.split('.')
+
+RECENT_SETUPTOOLS = int(SETUPTOOLS_VER[0]) > 40 or (
+ int(SETUPTOOLS_VER[0]) == 40 and int(SETUPTOOLS_VER[1]) > 0) or (
+ int(SETUPTOOLS_VER[0]) == 40 and int(SETUPTOOLS_VER[1]) == 0 and
+ int(SETUPTOOLS_VER[2]) > 0)
+
+class EggInfoFromGit(egg_info):
+ """Tag the build with git commit timestamp.
+
+ If a build tag has already been set (e.g., "egg_info -b", building
+ from source package), leave it alone.
+ """
+
+ def git_timestamp_tag(self):
+ gitinfo = subprocess.check_output(
+ ['git', 'log', '--first-parent', '--max-count=1',
+ '--format=format:%ct', '.']).strip()
+ return time.strftime('.%Y%m%d%H%M%S', time.gmtime(int(gitinfo)))
+
+ def tags(self):
+ if self.tag_build is None:
+ try:
+ self.tag_build = self.git_timestamp_tag()
+ except subprocess.CalledProcessError:
+ pass
+ return egg_info.tags(self)
+
+ if RECENT_SETUPTOOLS:
+ vtags = property(tags)
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..acff69b
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,44 @@
+#!/usr/bin/env python3
+import os
+import sys
+
+import setuptools.command.egg_info as egg_info_cmd
+from setuptools import setup
+
+SETUP_DIR = os.path.dirname(__file__)
+README = os.path.join(SETUP_DIR, "README.rst")
+
+try:
+ import gittaggers
+
+ tagger = gittaggers.EggInfoFromGit
+except ImportError:
+ tagger = egg_info_cmd.egg_info
+
+install_requires = []
+
+needs_pytest = {"pytest", "test", "ptr"}.intersection(sys.argv)
+pytest_runner = ["pytest < 6", "pytest-runner < 5"] if needs_pytest else []
+
+setup(
+ name="bh20-seq-uploader",
+ version="1.0",
+ description="Biohackathon sequence uploader",
+ long_description=open(README).read(),
+ long_description_content_type="text/x-rst",
+ author="Peter Amstutz",
+ author_email="peter.amstutz@curii.com",
+ license="Apache 2.0",
+ packages=["bh20sequploader"],
+ install_requires=install_requires,
+ setup_requires=[] + pytest_runner,
+ tests_require=["pytest<5"],
+ entry_points={
+ "console_scripts": [
+ "bh20sequploader=bh20sequploader.main:main"
+ ]
+ },
+ zip_safe=True,
+ cmdclass={"egg_info": tagger},
+ python_requires=">=3.5, <4",
+)