diff options
| -rw-r--r-- | scripts/dict_ontology_standardization/ncbi_countries.csv | 27 | ||||
| -rw-r--r-- | scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv | 6 |
2 files changed, 28 insertions, 5 deletions
diff --git a/scripts/dict_ontology_standardization/ncbi_countries.csv b/scripts/dict_ontology_standardization/ncbi_countries.csv index a3a55ca..79552ed 100644 --- a/scripts/dict_ontology_standardization/ncbi_countries.csv +++ b/scripts/dict_ontology_standardization/ncbi_countries.csv @@ -1,4 +1,6 @@ 30.59 N 114.3 E,http://www.wikidata.org/entity/Q11746 +35.92 N 74.33 E,http://www.wikidata.org/entity/Q609024 +39.54 N 116.23 E,http://www.wikidata.org/entity/Q198244 Afghanistan,http://www.wikidata.org/entity/Q889 Albania,http://www.wikidata.org/entity/Q222 Algeria,http://www.wikidata.org/entity/Q262 @@ -41,15 +43,18 @@ China: Chongqing,http://www.wikidata.org/entity/Q11725 China: Fujian,http://www.wikidata.org/entity/Q41705 China: Gansu,http://www.wikidata.org/entity/Q42392 China: Guangdong,http://www.wikidata.org/entity/Q15175 +"“China: Guangdong, Guangzhou”",http://www.wikidata.org/entity/Q16572 China: Guangxi Zhuang Autonomous Region,http://www.wikidata.org/entity/Q15176 +China: Guangzhou,http://www.wikidata.org/entity/Q16572 China: Guizhou,http://www.wikidata.org/entity/Q47097 China: Hainan,http://www.wikidata.org/entity/Q42200 China: Hebei,http://www.wikidata.org/entity/Q21208 China: Heilongjiang,http://www.wikidata.org/entity/Q19206 China: Henan,http://www.wikidata.org/entity/Q43684 China: Hong Kong,http://www.wikidata.org/entity/Q8646 +China: HuaShang,http://www.wikidata.org/entity/Q148 China: Hubei,http://www.wikidata.org/entity/Q46862 -"China: Hubei, Wuhan",http://www.wikidata.org/entity/Q11746 +"“China: Hubei, Wuhan”",http://www.wikidata.org/entity/Q11746 China: Hunan,http://www.wikidata.org/entity/Q45761 China: Inner Mongolia,http://www.wikidata.org/entity/Q41079 China: Jiangsu,http://www.wikidata.org/entity/Q16963 @@ -63,13 +68,17 @@ China: Shaanxi,http://www.wikidata.org/entity/Q47974 China: Shandong,http://www.wikidata.org/entity/Q43407 China: Shanghai,http://www.wikidata.org/entity/Q8686 China: Shanxi,http://www.wikidata.org/entity/Q46913 +China: Shenzhen,http://www.wikidata.org/entity/Q15174 China: Sichuan,http://www.wikidata.org/entity/Q19770 China: Tianjin,http://www.wikidata.org/entity/Q11736 China: Tibet Autonomous Region,http://www.wikidata.org/entity/Q17269 +China: Wuhan,http://www.wikidata.org/entity/Q11746 China: Xinjiang,http://www.wikidata.org/entity/Q34800 China: Yunnan,http://www.wikidata.org/entity/Q43194 China: Zhejiang,http://www.wikidata.org/entity/Q16967 +"“China: Zhejiang, Hangzhou”",http://www.wikidata.org/entity/Q4970 Colombia,http://www.wikidata.org/entity/Q739 +Colombia: Antioquia,http://www.wikidata.org/entity/Q123304 Comoros,http://www.wikidata.org/entity/Q970 Costa Rica,http://www.wikidata.org/entity/Q800 Croatia,http://www.wikidata.org/entity/Q224 @@ -110,8 +119,10 @@ Hungary,http://www.wikidata.org/entity/Q28 Iceland,http://www.wikidata.org/entity/Q189 Icelandic Commonwealth,http://www.wikidata.org/entity/Q62389 India,http://www.wikidata.org/entity/Q668 +India: Kerala State,http://www.wikidata.org/entity/Q1186 Indonesia,http://www.wikidata.org/entity/Q252 Iran,http://www.wikidata.org/entity/Q794 +Iran: Qum,http://www.wikidata.org/entity/Q131664 Iran: Tehran,http://www.wikidata.org/entity/Q3616 Iraq,http://www.wikidata.org/entity/Q796 Ireland,http://www.wikidata.org/entity/Q27 @@ -163,12 +174,15 @@ New Zealand,http://www.wikidata.org/entity/Q664 Nicaragua,http://www.wikidata.org/entity/Q811 Niger,http://www.wikidata.org/entity/Q1032 Nigeria,http://www.wikidata.org/entity/Q1033 +Nigeria: Lagos,http://www.wikidata.org/entity/Q8673 North Korea,http://www.wikidata.org/entity/Q423 North Macedonia,http://www.wikidata.org/entity/Q221 Norway,http://www.wikidata.org/entity/Q20 Oman,http://www.wikidata.org/entity/Q842 Ottoman Empire,http://www.wikidata.org/entity/Q12560 Pakistan,http://www.wikidata.org/entity/Q843 +Pakistan: Gilgit,http://www.wikidata.org/entity/Q609024 +Pakistan: KPK,http://www.wikidata.org/entity/Q183314 Palau,http://www.wikidata.org/entity/Q695 Panama,http://www.wikidata.org/entity/Q804 Papua New Guinea,http://www.wikidata.org/entity/Q691 @@ -203,6 +217,7 @@ Slovenia,http://www.wikidata.org/entity/Q215 Solomon Islands,http://www.wikidata.org/entity/Q685 Somalia,http://www.wikidata.org/entity/Q1045 South Africa,http://www.wikidata.org/entity/Q258 +South Africa: KwaZulu-Natal,http://www.wikidata.org/entity/Q81725 South African Republic,http://www.wikidata.org/entity/Q550374 South Korea,http://www.wikidata.org/entity/Q884 South Sudan,http://www.wikidata.org/entity/Q958 @@ -215,6 +230,7 @@ Suriname,http://www.wikidata.org/entity/Q730 Sweden,http://www.wikidata.org/entity/Q34 Switzerland,http://www.wikidata.org/entity/Q39 Syria,http://www.wikidata.org/entity/Q858 +Taiwan,http://www.wikidata.org/entity/Q865 Tajikistan,http://www.wikidata.org/entity/Q863 Tanzania,http://www.wikidata.org/entity/Q924 Thailand,http://www.wikidata.org/entity/Q869 @@ -224,6 +240,7 @@ Togo,http://www.wikidata.org/entity/Q945 Tonga,http://www.wikidata.org/entity/Q678 Trinidad and Tobago,http://www.wikidata.org/entity/Q754 Tunisia,http://www.wikidata.org/entity/Q948 +Tunisia: Tunis,http://www.wikidata.org/entity/Q3572 Turkey,http://www.wikidata.org/entity/Q43 Turkmenistan,http://www.wikidata.org/entity/Q874 Tuvalu,http://www.wikidata.org/entity/Q672 @@ -240,6 +257,7 @@ USA: AL,http://www.wikidata.org/entity/Q173 USA: AR,http://www.wikidata.org/entity/Q1612 USA: AZ,http://www.wikidata.org/entity/Q816 USA: CA,http://www.wikidata.org/entity/Q99 +"“USA: CA, San Diego County”",http://www.wikidata.org/entity/Q108143 USA: CO,http://www.wikidata.org/entity/Q1261 USA: CT,http://www.wikidata.org/entity/Q779 USA: DE,http://www.wikidata.org/entity/Q1393 @@ -249,6 +267,7 @@ USA: HI,http://www.wikidata.org/entity/Q782 USA: IA,http://www.wikidata.org/entity/Q1546 USA: ID,http://www.wikidata.org/entity/Q1221 USA: IL,http://www.wikidata.org/entity/Q1204 +USA: Illinois,http://www.wikidata.org/entity/Q1204 USA: IN,http://www.wikidata.org/entity/Q1415 USA: KS,http://www.wikidata.org/entity/Q1558 USA: KY,http://www.wikidata.org/entity/Q1603 @@ -274,6 +293,7 @@ USA: OK,http://www.wikidata.org/entity/Q1649 USA: OR,http://www.wikidata.org/entity/Q824 USA: PA,http://www.wikidata.org/entity/Q1400 USA: RI,http://www.wikidata.org/entity/Q1387 +"“USA: San Francisco, CA”",http://www.wikidata.org/entity/Q62 USA: SC,http://www.wikidata.org/entity/Q1456 USA: SD,http://www.wikidata.org/entity/Q1211 USA: TN,http://www.wikidata.org/entity/Q1509 @@ -289,9 +309,10 @@ Uzbekistan,http://www.wikidata.org/entity/Q265 Vanuatu,http://www.wikidata.org/entity/Q686 Vatican City,http://www.wikidata.org/entity/Q237 Venezuela,http://www.wikidata.org/entity/Q717 -Vietnam,http://www.wikidata.org/entity/Q881 Viet nam,http://www.wikidata.org/entity/Q881 +Viet Nam,http://www.wikidata.org/entity/Q881 Viet Nam: Ho Chi Minh city,http://www.wikidata.org/entity/Q1854 +Vietnam,http://www.wikidata.org/entity/Q881 Yemen,http://www.wikidata.org/entity/Q805 Zambia,http://www.wikidata.org/entity/Q953 -Zimbabwe,http://www.wikidata.org/entity/Q954
\ No newline at end of file +Zimbabwe,http://www.wikidata.org/entity/Q954 diff --git a/scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv b/scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv index 12d4e94..8e37b8c 100644 --- a/scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv +++ b/scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv @@ -5,6 +5,7 @@ Oxford Nanopore MinION,http://www.ebi.ac.uk/efo/EFO_0008632 ONT (Oxford Nanopore Technologies),http://www.ebi.ac.uk/efo/EFO_0008632 Oxford Nanopore technologies MinION,http://www.ebi.ac.uk/efo/EFO_0008632 MinION Oxford Nanopore,http://www.ebi.ac.uk/efo/EFO_0008632 +Nanopore,http://purl.obolibrary.org/obo/NCIT_C146818 Illumina MiSeq,http://www.ebi.ac.uk/efo/EFO_0004205 Illumina,http://purl.obolibrary.org/obo/OBI_0000759 Oxford Nanopore technology,http://purl.obolibrary.org/obo/NCIT_C146818 @@ -12,6 +13,7 @@ Oxford Nanopore Technologies,http://purl.obolibrary.org/obo/NCIT_C146818 Oxford Nanopore,http://purl.obolibrary.org/obo/NCIT_C146818 IonTorrent,http://purl.obolibrary.org/obo/NCIT_C125894 Ion Torrent X5Plus,http://purl.obolibrary.org/obo/NCIT_C125894 +ThermoFisher S5Plus,http://purl.obolibrary.org/obo/NCIT_C125894 Sanger dideoxy sequencing,http://purl.obolibrary.org/obo/NCIT_C19641 -MGISEQ 2000, http://virtual-bh/MGISEQ2000 -MGISEQ2000, http://virtual-bh/MGISEQ2000
\ No newline at end of file +MGISEQ 2000,http://virtual-bh/MGISEQ2000 +MGISEQ2000,http://virtual-bh/MGISEQ2000
\ No newline at end of file |