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| author | Peter Amstutz | 2020-11-09 16:55:33 -0500 |
|---|---|---|
| committer | Peter Amstutz | 2020-11-09 16:55:33 -0500 |
| commit | b5143c79de268b844f3a6a63d92c6389b047f35e (patch) | |
| tree | a840b28cdb10bc59adebca6cd0222ce0b717f48e /workflows | |
| parent | 0d1831449d7541e0ec36fd75793915d144a02b5d (diff) | |
| download | bh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.tar.gz bh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.tar.lz bh20-seq-resource-b5143c79de268b844f3a6a63d92c6389b047f35e.zip | |
Make it so "pangenome analysis" only runs collect-seqs.
Will ensure that metadata is kept up to date.
GFA isn't being generated. Will introduce new workflow that uses
from_sparql to analyze a subset.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows')
| -rwxr-xr-x | workflows/update-workflows.sh | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/update-workflows.sh b/workflows/update-workflows.sh index 3b69a58..5182ec4 100755 --- a/workflows/update-workflows.sh +++ b/workflows/update-workflows.sh @@ -1,3 +1,3 @@ #!/bin/sh arvados-cwl-runner --project-uuid=lugli-j7d0g-5hswinmpyho8dju --update-workflow=lugli-7fd4e-2zp9q4jo5xpif9y fastq2fasta/fastq2fasta.cwl -arvados-cwl-runner --project-uuid=lugli-j7d0g-5hswinmpyho8dju --update-workflow=lugli-7fd4e-mqfu9y3ofnpnho1 pangenome-generate/arv-main.cwl +arvados-cwl-runner --project-uuid=lugli-j7d0g-5hswinmpyho8dju --update-workflow=lugli-7fd4e-mqfu9y3ofnpnho1 pangenome-generate/collect-seqs.cwl |