aboutsummaryrefslogtreecommitdiff
path: root/workflows
diff options
context:
space:
mode:
authorAndrea Guarracino2020-06-18 18:08:27 +0200
committerGitHub2020-06-18 18:08:27 +0200
commitbbc563d1d6d45bcaa15d054f872bb3a448c94734 (patch)
tree0bb6872a55cb88a3b398090442cab01035289683 /workflows
parent1554fb6b4daf263f034d46a5f5b26ebcc3e69d22 (diff)
downloadbh20-seq-resource-bbc563d1d6d45bcaa15d054f872bb3a448c94734.tar.gz
bh20-seq-resource-bbc563d1d6d45bcaa15d054f872bb3a448c94734.tar.lz
bh20-seq-resource-bbc563d1d6d45bcaa15d054f872bb3a448c94734.zip
removed double sorting
The -s argument in odgi build do the same thing that odgi sort -p s does.
Diffstat (limited to 'workflows')
-rw-r--r--workflows/pangenome-generate/odgi-build.cwl2
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/odgi-build.cwl b/workflows/pangenome-generate/odgi-build.cwl
index 0bd6a20..b594438 100644
--- a/workflows/pangenome-generate/odgi-build.cwl
+++ b/workflows/pangenome-generate/odgi-build.cwl
@@ -21,6 +21,6 @@ hints:
listing:
- entry: $(inputs.inputGFA)
writable: true
-arguments: [odgi, build, -g, $(inputs.inputGFA), -s, -o, -,
+arguments: [odgi, build, -g, $(inputs.inputGFA), -o, -,
{shellQuote: false, valueFrom: "|"},
odgi, sort, -i, -, -p, s, -o, $(inputs.inputGFA.nameroot).odgi]