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| author | AndreaGuarracino | 2021-01-07 23:02:54 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2021-01-07 23:02:54 +0100 |
| commit | 141e619929cee17018417d71111063015e73c366 (patch) | |
| tree | baa8f98aaed7aef615d37b5560a988381ac8030f /workflows/yamlfa2ttl/check_sequence.cwl | |
| parent | 430090a65786b0b9dde9e1319a740f95579d0275 (diff) | |
| download | bh20-seq-resource-141e619929cee17018417d71111063015e73c366.tar.gz bh20-seq-resource-141e619929cee17018417d71111063015e73c366.tar.lz bh20-seq-resource-141e619929cee17018417d71111063015e73c366.zip | |
added check_sequence workflow and script
Diffstat (limited to 'workflows/yamlfa2ttl/check_sequence.cwl')
| -rw-r--r-- | workflows/yamlfa2ttl/check_sequence.cwl | 20 |
1 files changed, 20 insertions, 0 deletions
diff --git a/workflows/yamlfa2ttl/check_sequence.cwl b/workflows/yamlfa2ttl/check_sequence.cwl new file mode 100644 index 0000000..946948d --- /dev/null +++ b/workflows/yamlfa2ttl/check_sequence.cwl @@ -0,0 +1,20 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.1 +class: CommandLineTool +baseCommand: python3 + +inputs: + script: + type: File + inputBinding: {position: 1} + default: {class: File, location: check_sequence.py} + path_fasta: + type: string + inputBinding: {position: 2} + path_sars_cov_2_reference_fasta: + type: File + inputBinding: {position: 3} + default: {class: File, location: ../../bh20sequploader/SARS-CoV-2-reference.fasta} + +outputs: [] |