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| author | Pjotr Prins | 2021-01-04 08:58:38 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2021-01-04 08:58:38 +0000 |
| commit | 1c4e055b8a9dc53b7fdbdf12d4b0a7e877fbc2ef (patch) | |
| tree | 34cc42ef12b81c05be8a57ca2a973b97e52f8461 /workflows/pull-data/genbank/genbank.py | |
| parent | ba4161b1660c3a67090dd3715e9862906fb1cc5f (diff) | |
| download | bh20-seq-resource-1c4e055b8a9dc53b7fdbdf12d4b0a7e877fbc2ef.tar.gz bh20-seq-resource-1c4e055b8a9dc53b7fdbdf12d4b0a7e877fbc2ef.tar.lz bh20-seq-resource-1c4e055b8a9dc53b7fdbdf12d4b0a7e877fbc2ef.zip | |
Started on normalization
Diffstat (limited to 'workflows/pull-data/genbank/genbank.py')
| -rw-r--r-- | workflows/pull-data/genbank/genbank.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/workflows/pull-data/genbank/genbank.py b/workflows/pull-data/genbank/genbank.py index 26cb5e7..85d615c 100644 --- a/workflows/pull-data/genbank/genbank.py +++ b/workflows/pull-data/genbank/genbank.py @@ -1,4 +1,6 @@ # Genbank XML parser +# +# Pjotr Prins (c) 2021 from collections import namedtuple import dateutil @@ -59,7 +61,7 @@ Example of an output JSON: def get_metadata(id, gbseq): """This is a minimal data parser from genbank XML records. Inference on, for example geo location, is not allowed in this function and - happens downstream. + happens downstream (in normalize). That is to keep the parsing simple. |