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| author | Pjotr Prins | 2020-12-31 14:17:42 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2020-12-31 14:17:42 +0000 |
| commit | 3541089aa8af5d229e669eb38d3735cd2b0b8a05 (patch) | |
| tree | f06614daeefe9c466828528196b6fc75332330a8 /workflows/pull-data/genbank/README.md | |
| parent | 918b3d2270acef9ebbc824dabc9c9433e0b30868 (diff) | |
| download | bh20-seq-resource-3541089aa8af5d229e669eb38d3735cd2b0b8a05.tar.gz bh20-seq-resource-3541089aa8af5d229e669eb38d3735cd2b0b8a05.tar.lz bh20-seq-resource-3541089aa8af5d229e669eb38d3735cd2b0b8a05.zip | |
genbank: sparql-fetch-ids
Diffstat (limited to 'workflows/pull-data/genbank/README.md')
| -rw-r--r-- | workflows/pull-data/genbank/README.md | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/workflows/pull-data/genbank/README.md b/workflows/pull-data/genbank/README.md index ee67e70..0204dd0 100644 --- a/workflows/pull-data/genbank/README.md +++ b/workflows/pull-data/genbank/README.md @@ -1,4 +1,4 @@ -Pipeline: +# pipeline ```sh # --- get list of IDs already in PubSeq @@ -11,3 +11,7 @@ genbank-fetch-ids --dir ~/tmp/pubseq > genbank_ids.txt for id in genbank_ids.txt: transform-genbank-xml2yamlfa --dir ~/tmp/genbank id --outdir ~/tmp/pubseq ``` + +# TODO + +- [ ] Add id for GenBank accession - i.e. how can we tell a record is from GenBank |