aboutsummaryrefslogtreecommitdiff
path: root/workflows/pull-data/genbank/.guix-run
diff options
context:
space:
mode:
authorPjotr Prins2020-12-31 09:58:30 +0000
committerPjotr Prins2020-12-31 09:58:30 +0000
commitd1a554001e62cb13da3498296a68092d8bff7824 (patch)
tree6e427ab5a3094f730bfdf9b73251a697e5cdfc4f /workflows/pull-data/genbank/.guix-run
parentb974db8f4e3fcc8bc4af3ade25b9e1bf5fbc37f1 (diff)
downloadbh20-seq-resource-d1a554001e62cb13da3498296a68092d8bff7824.tar.gz
bh20-seq-resource-d1a554001e62cb13da3498296a68092d8bff7824.tar.lz
bh20-seq-resource-d1a554001e62cb13da3498296a68092d8bff7824.zip
genbank: moving script into workflow space
Diffstat (limited to 'workflows/pull-data/genbank/.guix-run')
-rw-r--r--workflows/pull-data/genbank/.guix-run5
1 files changed, 5 insertions, 0 deletions
diff --git a/workflows/pull-data/genbank/.guix-run b/workflows/pull-data/genbank/.guix-run
new file mode 100644
index 0000000..1403c69
--- /dev/null
+++ b/workflows/pull-data/genbank/.guix-run
@@ -0,0 +1,5 @@
+#!/bin/sh
+# Runner
+
+echo python3 from_genbank_to_fasta_and_yaml.py
+guix environment guix --ad-hoc python python-biopython python-requests python-dateutil