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| author | Pjotr Prins | 2021-01-26 16:22:19 +0000 |
|---|---|---|
| committer | GitHub | 2021-01-26 16:22:19 +0000 |
| commit | a54122023ef2bde4ef4fc39355b3491678bbf773 (patch) | |
| tree | 150bef4a574486db9e7c16d87be89ad219d84bb1 /workflows/phylogeny/awk-coverage.cwl | |
| parent | b112b3203e34ea61dfdf802bce5036f938eaa774 (diff) | |
| parent | 4842117f530aba08b4a253aee533a8d4802b1c12 (diff) | |
| download | bh20-seq-resource-a54122023ef2bde4ef4fc39355b3491678bbf773.tar.gz bh20-seq-resource-a54122023ef2bde4ef4fc39355b3491678bbf773.tar.lz bh20-seq-resource-a54122023ef2bde4ef4fc39355b3491678bbf773.zip | |
Merge pull request #124 from urbanslug/master
Add phylogeny workflow
Diffstat (limited to 'workflows/phylogeny/awk-coverage.cwl')
| -rw-r--r-- | workflows/phylogeny/awk-coverage.cwl | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/workflows/phylogeny/awk-coverage.cwl b/workflows/phylogeny/awk-coverage.cwl new file mode 100644 index 0000000..f7a357f --- /dev/null +++ b/workflows/phylogeny/awk-coverage.cwl @@ -0,0 +1,23 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.1 +class: CommandLineTool + +baseCommand: awk + +inputs: + consensus_regex: + type: string + inputBinding: + position: 1 + + coverage_tsv: + type: File + inputBinding: + position: 2 + +outputs: + awk_coverage_matrix: + type: stdout + +stdout: coverage.no_consensus.tsv
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