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| author | Pjotr Prins | 2021-01-26 16:22:19 +0000 |
|---|---|---|
| committer | GitHub | 2021-01-26 16:22:19 +0000 |
| commit | a54122023ef2bde4ef4fc39355b3491678bbf773 (patch) | |
| tree | 150bef4a574486db9e7c16d87be89ad219d84bb1 /workflows/phylogeny/augur.cwl | |
| parent | b112b3203e34ea61dfdf802bce5036f938eaa774 (diff) | |
| parent | 4842117f530aba08b4a253aee533a8d4802b1c12 (diff) | |
| download | bh20-seq-resource-a54122023ef2bde4ef4fc39355b3491678bbf773.tar.gz bh20-seq-resource-a54122023ef2bde4ef4fc39355b3491678bbf773.tar.lz bh20-seq-resource-a54122023ef2bde4ef4fc39355b3491678bbf773.zip | |
Merge pull request #124 from urbanslug/master
Add phylogeny workflow
Diffstat (limited to 'workflows/phylogeny/augur.cwl')
| -rw-r--r-- | workflows/phylogeny/augur.cwl | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/workflows/phylogeny/augur.cwl b/workflows/phylogeny/augur.cwl new file mode 100644 index 0000000..4676333 --- /dev/null +++ b/workflows/phylogeny/augur.cwl @@ -0,0 +1,36 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.1 + +class: CommandLineTool +baseCommand: bash + +requirements: + InitialWorkDirRequirement: + listing: + - $(inputs.dataDir) + +inputs: + nextstrain_bash_script: + type: File + inputBinding: + position: 1 + + newick_tree_2: + type: File + inputBinding: + position: 2 + + metadata_newick: + type: File + inputBinding: + position: 3 + + dataDir: + type: Directory + +outputs: + newick_json: + type: File + outputBinding: + glob: 'covid.json'
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