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authorPeter Amstutz2020-04-21 17:09:16 -0400
committerPeter Amstutz2020-04-21 17:09:16 -0400
commitce696b41b3476891ecb05185d64c289b140a73af (patch)
tree466dfc19d583aedb44f366ddacc6fa8e0b7a890e /workflows/pangenome-generate
parent61726edb9293fe529e6efbe5bb6f1cc953bb3c4e (diff)
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Increase ram requirement for minimap2
Add --kickoff to immediately start an analysis workflow. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate')
-rw-r--r--workflows/pangenome-generate/minimap2.cwl2
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/minimap2.cwl b/workflows/pangenome-generate/minimap2.cwl
index bf19ef7..42d1dce 100644
--- a/workflows/pangenome-generate/minimap2.cwl
+++ b/workflows/pangenome-generate/minimap2.cwl
@@ -12,7 +12,7 @@ hints:
ResourceRequirement:
coresMin: 8
coresMax: 32
- ramMin: $(7 * 1024)
+ ramMin: $(9 * 1024)
outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20))
stdout: $(inputs.readsFA.nameroot).paf
baseCommand: minimap2