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| author | Peter Amstutz | 2020-04-21 17:09:16 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-21 17:09:16 -0400 |
| commit | ce696b41b3476891ecb05185d64c289b140a73af (patch) | |
| tree | 466dfc19d583aedb44f366ddacc6fa8e0b7a890e /workflows/pangenome-generate | |
| parent | 61726edb9293fe529e6efbe5bb6f1cc953bb3c4e (diff) | |
| download | bh20-seq-resource-ce696b41b3476891ecb05185d64c289b140a73af.tar.gz bh20-seq-resource-ce696b41b3476891ecb05185d64c289b140a73af.tar.lz bh20-seq-resource-ce696b41b3476891ecb05185d64c289b140a73af.zip | |
Increase ram requirement for minimap2
Add --kickoff to immediately start an analysis workflow.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate')
| -rw-r--r-- | workflows/pangenome-generate/minimap2.cwl | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/minimap2.cwl b/workflows/pangenome-generate/minimap2.cwl index bf19ef7..42d1dce 100644 --- a/workflows/pangenome-generate/minimap2.cwl +++ b/workflows/pangenome-generate/minimap2.cwl @@ -12,7 +12,7 @@ hints: ResourceRequirement: coresMin: 8 coresMax: 32 - ramMin: $(7 * 1024) + ramMin: $(9 * 1024) outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20)) stdout: $(inputs.readsFA.nameroot).paf baseCommand: minimap2 |