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| author | Pjotr Prins | 2020-05-06 09:03:08 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2020-05-06 09:03:08 -0500 |
| commit | 0031e778ee1ad8b934411da5082fcb3115646e67 (patch) | |
| tree | be17fb9aff6351e967a9210cd4c58a60ad55a382 /workflows/pangenome-generate | |
| parent | 7d7af6cde75d09da7a05cf5bc05ef2556c3aea92 (diff) | |
| parent | b6d846b5de6c67b28adab1fa520953115a1a1e30 (diff) | |
| download | bh20-seq-resource-0031e778ee1ad8b934411da5082fcb3115646e67.tar.gz bh20-seq-resource-0031e778ee1ad8b934411da5082fcb3115646e67.tar.lz bh20-seq-resource-0031e778ee1ad8b934411da5082fcb3115646e67.zip | |
Merge branch 'master' of github.com:arvados/bh20-seq-resource
Diffstat (limited to 'workflows/pangenome-generate')
| -rw-r--r-- | workflows/pangenome-generate/minimap2.cwl | 2 | ||||
| -rw-r--r-- | workflows/pangenome-generate/odgi_to_rdf.cwl | 4 |
2 files changed, 4 insertions, 2 deletions
diff --git a/workflows/pangenome-generate/minimap2.cwl b/workflows/pangenome-generate/minimap2.cwl index 42d1dce..bf8eb4c 100644 --- a/workflows/pangenome-generate/minimap2.cwl +++ b/workflows/pangenome-generate/minimap2.cwl @@ -12,7 +12,7 @@ hints: ResourceRequirement: coresMin: 8 coresMax: 32 - ramMin: $(9 * 1024) + ramMin: $(15 * 1024) outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20)) stdout: $(inputs.readsFA.nameroot).paf baseCommand: minimap2 diff --git a/workflows/pangenome-generate/odgi_to_rdf.cwl b/workflows/pangenome-generate/odgi_to_rdf.cwl index 079d6fb..e6a279b 100644 --- a/workflows/pangenome-generate/odgi_to_rdf.cwl +++ b/workflows/pangenome-generate/odgi_to_rdf.cwl @@ -3,10 +3,12 @@ class: CommandLineTool cwlVersion: v1.1 hints: DockerRequirement: - dockerPull: spodgi/spodgi + dockerPull: jerven/spodgi:0.0.6 requirements: InlineJavascriptRequirement: {} ShellCommandRequirement: {} + ResourceRequirement: + ramMin: $((2 * 1024) + 1) inputs: - id: odgi type: File |