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| author | LLTommy | 2020-06-24 08:43:45 +0200 |
|---|---|---|
| committer | GitHub | 2020-06-24 08:43:45 +0200 |
| commit | b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b (patch) | |
| tree | 1cf24e4a455decd6c152875f4f7fcf779adb2bbe /workflows/pangenome-generate | |
| parent | 76883d02e6073f990ea980dad1f8cf21121255ff (diff) | |
| parent | bbc563d1d6d45bcaa15d054f872bb3a448c94734 (diff) | |
| download | bh20-seq-resource-b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b.tar.gz bh20-seq-resource-b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b.tar.lz bh20-seq-resource-b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b.zip | |
Merge pull request #85 from AndreaGuarracino/patch-18
removed double sorting
Diffstat (limited to 'workflows/pangenome-generate')
| -rw-r--r-- | workflows/pangenome-generate/odgi-build.cwl | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/odgi-build.cwl b/workflows/pangenome-generate/odgi-build.cwl index 0bd6a20..b594438 100644 --- a/workflows/pangenome-generate/odgi-build.cwl +++ b/workflows/pangenome-generate/odgi-build.cwl @@ -21,6 +21,6 @@ hints: listing: - entry: $(inputs.inputGFA) writable: true -arguments: [odgi, build, -g, $(inputs.inputGFA), -s, -o, -, +arguments: [odgi, build, -g, $(inputs.inputGFA), -o, -, {shellQuote: false, valueFrom: "|"}, odgi, sort, -i, -, -p, s, -o, $(inputs.inputGFA.nameroot).odgi] |