aboutsummaryrefslogtreecommitdiff
path: root/workflows/pangenome-generate
diff options
context:
space:
mode:
authorLLTommy2020-06-24 08:43:45 +0200
committerGitHub2020-06-24 08:43:45 +0200
commitb188fa4d896e1159ae424ab1c9bcfb21eb8ac67b (patch)
tree1cf24e4a455decd6c152875f4f7fcf779adb2bbe /workflows/pangenome-generate
parent76883d02e6073f990ea980dad1f8cf21121255ff (diff)
parentbbc563d1d6d45bcaa15d054f872bb3a448c94734 (diff)
downloadbh20-seq-resource-b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b.tar.gz
bh20-seq-resource-b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b.tar.lz
bh20-seq-resource-b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b.zip
Merge pull request #85 from AndreaGuarracino/patch-18
removed double sorting
Diffstat (limited to 'workflows/pangenome-generate')
-rw-r--r--workflows/pangenome-generate/odgi-build.cwl2
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/odgi-build.cwl b/workflows/pangenome-generate/odgi-build.cwl
index 0bd6a20..b594438 100644
--- a/workflows/pangenome-generate/odgi-build.cwl
+++ b/workflows/pangenome-generate/odgi-build.cwl
@@ -21,6 +21,6 @@ hints:
listing:
- entry: $(inputs.inputGFA)
writable: true
-arguments: [odgi, build, -g, $(inputs.inputGFA), -s, -o, -,
+arguments: [odgi, build, -g, $(inputs.inputGFA), -o, -,
{shellQuote: false, valueFrom: "|"},
odgi, sort, -i, -, -p, s, -o, $(inputs.inputGFA.nameroot).odgi]