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| author | Peter Amstutz | 2020-08-19 15:15:57 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-08-19 16:31:38 -0400 |
| commit | d1e8809a15ae74d0b847abb80f9f63f53078e1d6 (patch) | |
| tree | 77a62801b9e8928889d85dadccf1ffce85b2e0cb /workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl | |
| parent | b3d2ccf951903ac0b7d717357fb1cccca26fbd15 (diff) | |
| download | bh20-seq-resource-d1e8809a15ae74d0b847abb80f9f63f53078e1d6.tar.gz bh20-seq-resource-d1e8809a15ae74d0b847abb80f9f63f53078e1d6.tar.lz bh20-seq-resource-d1e8809a15ae74d0b847abb80f9f63f53078e1d6.zip | |
Scaling pangenome generation
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl')
| -rw-r--r-- | workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl b/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl index f8da5d3..9d9b31d 100644 --- a/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl +++ b/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl @@ -16,6 +16,9 @@ stdout: $(inputs.readsFA.nameroot).sorted_by_quality_and_len.fasta outputs: sortedReadsFA: type: stdout + dups: + type: File + outputBinding: {glob: dups.txt} requirements: InlineJavascriptRequirement: {} ShellCommandRequirement: {} |