diff options
| author | Peter Amstutz | 2020-08-05 16:06:11 -0400 |
|---|---|---|
| committer | GitHub | 2020-08-05 16:06:11 -0400 |
| commit | fdb1b012fc04ee07f401541e181e28fe442c9454 (patch) | |
| tree | 8486db1087692dffcea9d93814e436d9cf150b47 /workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl | |
| parent | 86f31ef60f65a820bf9ac25c3fc01c88f2a9ebfe (diff) | |
| parent | 2d20bf90497588a297ca98a78ee0fbbcadf95569 (diff) | |
| download | bh20-seq-resource-fdb1b012fc04ee07f401541e181e28fe442c9454.tar.gz bh20-seq-resource-fdb1b012fc04ee07f401541e181e28fe442c9454.tar.lz bh20-seq-resource-fdb1b012fc04ee07f401541e181e28fe442c9454.zip | |
Merge pull request #99 from AndreaGuarracino/patch-2
several fixes in the website, added links to video talk and poster, new pangenome generation workflow
Diffstat (limited to 'workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl')
| -rw-r--r-- | workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl b/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl new file mode 100644 index 0000000..59f027e --- /dev/null +++ b/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl @@ -0,0 +1,18 @@ +cwlVersion: v1.1 +class: CommandLineTool +inputs: + readsFA: + type: File + inputBinding: {position: 2} + script: + type: File + inputBinding: {position: 1} + default: {class: File, location: sort_fasta_by_quality_and_len.py} +stdout: $(inputs.readsFA.nameroot).sorted_by_quality_and_len.fasta +outputs: + sortedReadsFA: + type: stdout +requirements: + InlineJavascriptRequirement: {} + ShellCommandRequirement: {} +baseCommand: [python] |