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| author | Pjotr Prins | 2020-12-24 09:15:39 +0000 |
|---|---|---|
| committer | GitHub | 2020-12-24 09:15:39 +0000 |
| commit | df0421757e464f07b5e96b5444f1926784e7400f (patch) | |
| tree | f9a9a262bb2d95a89a6ec1c96b98a2b166fb92b5 /workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl | |
| parent | 00ba74b163f723bb7283624171f0c7c203dc99e5 (diff) | |
| parent | bfd830f9d777c456409958030142155043ec1c68 (diff) | |
| download | bh20-seq-resource-df0421757e464f07b5e96b5444f1926784e7400f.tar.gz bh20-seq-resource-df0421757e464f07b5e96b5444f1926784e7400f.tar.lz bh20-seq-resource-df0421757e464f07b5e96b5444f1926784e7400f.zip | |
Merge pull request #117 from arvados/pangenome_workflow_abpoa
Pangenome workflow with abPOA
Diffstat (limited to 'workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl')
| -rw-r--r-- | workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl b/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl index 26c20e8..6f71d92 100644 --- a/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl +++ b/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl @@ -1,3 +1,4 @@ + cwlVersion: v1.1 class: CommandLineTool hints: @@ -5,6 +6,9 @@ hints: coresMin: 1 ramMin: 3000 inputs: + reversed_sorting: + type: string + inputBinding: {position: 3} readsFA: type: File inputBinding: {position: 2} @@ -23,3 +27,4 @@ requirements: InlineJavascriptRequirement: {} ShellCommandRequirement: {} baseCommand: [python] + |