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| author | Peter Amstutz | 2020-04-20 13:41:56 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-20 13:41:56 -0400 |
| commit | d29dfd593233541b85c1cefb239650279d57d59f (patch) | |
| tree | 51fa615a05a2606021bdf8c537ad8b36ae4e0a8c /workflows/pangenome-generate/seqkit-rmdup.cwl | |
| parent | d781e42c9adac07253cb928ae66e9b7314710267 (diff) | |
| download | bh20-seq-resource-d29dfd593233541b85c1cefb239650279d57d59f.tar.gz bh20-seq-resource-d29dfd593233541b85c1cefb239650279d57d59f.tar.lz bh20-seq-resource-d29dfd593233541b85c1cefb239650279d57d59f.zip | |
Relabel sequences to match metadata subjects.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/seqkit-rmdup.cwl')
| -rw-r--r-- | workflows/pangenome-generate/seqkit-rmdup.cwl | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/seqkit-rmdup.cwl b/workflows/pangenome-generate/seqkit-rmdup.cwl index d3626f5..07184c3 100644 --- a/workflows/pangenome-generate/seqkit-rmdup.cwl +++ b/workflows/pangenome-generate/seqkit-rmdup.cwl @@ -7,6 +7,10 @@ outputs: type: File outputBinding: glob: readsMergeDedup.fasta + dups: + type: File + outputBinding: + glob: dups.txt requirements: InlineJavascriptRequirement: {} hints: @@ -28,5 +32,6 @@ baseCommand: seqkit arguments: [rmdup, --by-seq, --ignore-case, + --dup-num-file, dups.txt, -o, readsMergeDedup.fasta, $(inputs.readsFA)] |