diff options
| author | LLTommy | 2020-04-23 20:18:36 +0200 |
|---|---|---|
| committer | GitHub | 2020-04-23 20:18:36 +0200 |
| commit | 7049cd5d29acd601ccbbc9d04f001b84a51e9bd5 (patch) | |
| tree | 34a1254d81c2e526427fedb1deaa9f8441e8b260 /workflows/pangenome-generate/seqkit-rmdup.cwl | |
| parent | f38b9c6f22b82327df9648938a5a4bcf863d8c41 (diff) | |
| parent | c7612e7eda5cd38bfbb2d293bebf732893a41b6c (diff) | |
| download | bh20-seq-resource-7049cd5d29acd601ccbbc9d04f001b84a51e9bd5.tar.gz bh20-seq-resource-7049cd5d29acd601ccbbc9d04f001b84a51e9bd5.tar.lz bh20-seq-resource-7049cd5d29acd601ccbbc9d04f001b84a51e9bd5.zip | |
Merge branch 'master' into patch-3
Diffstat (limited to 'workflows/pangenome-generate/seqkit-rmdup.cwl')
| -rw-r--r-- | workflows/pangenome-generate/seqkit-rmdup.cwl | 7 |
1 files changed, 6 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/seqkit-rmdup.cwl b/workflows/pangenome-generate/seqkit-rmdup.cwl index d3626f5..071fa66 100644 --- a/workflows/pangenome-generate/seqkit-rmdup.cwl +++ b/workflows/pangenome-generate/seqkit-rmdup.cwl @@ -1,12 +1,16 @@ cwlVersion: v1.1 class: CommandLineTool inputs: - readsFA: File[] + readsFA: File outputs: readsMergeDedup: type: File outputBinding: glob: readsMergeDedup.fasta + dups: + type: File? + outputBinding: + glob: dups.txt requirements: InlineJavascriptRequirement: {} hints: @@ -28,5 +32,6 @@ baseCommand: seqkit arguments: [rmdup, --by-seq, --ignore-case, + --dup-num-file, dups.txt, -o, readsMergeDedup.fasta, $(inputs.readsFA)] |