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| author | Peter Amstutz | 2020-04-20 13:41:56 -0400 |
|---|---|---|
| committer | Peter Amstutz | 2020-04-20 13:41:56 -0400 |
| commit | d29dfd593233541b85c1cefb239650279d57d59f (patch) | |
| tree | 51fa615a05a2606021bdf8c537ad8b36ae4e0a8c /workflows/pangenome-generate/relabel-seqs.cwl | |
| parent | d781e42c9adac07253cb928ae66e9b7314710267 (diff) | |
| download | bh20-seq-resource-d29dfd593233541b85c1cefb239650279d57d59f.tar.gz bh20-seq-resource-d29dfd593233541b85c1cefb239650279d57d59f.tar.lz bh20-seq-resource-d29dfd593233541b85c1cefb239650279d57d59f.zip | |
Relabel sequences to match metadata subjects.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/relabel-seqs.cwl')
| -rw-r--r-- | workflows/pangenome-generate/relabel-seqs.cwl | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/relabel-seqs.cwl b/workflows/pangenome-generate/relabel-seqs.cwl new file mode 100644 index 0000000..b5b7231 --- /dev/null +++ b/workflows/pangenome-generate/relabel-seqs.cwl @@ -0,0 +1,19 @@ +cwlVersion: v1.1 +class: CommandLineTool +inputs: + readsFA: File[] + subjects: string[] +outputs: + relabeledSeqs: + type: stdout +requirements: + InlineJavascriptRequirement: {} + InitialWorkDirRequirement: + listing: + - entry: {$include: relabel-seqs.py} + entryname: relabel-seqs.py +hints: + DockerRequirement: + dockerPull: commonworkflowlanguage/cwltool_module +stdout: relabeledSeqs.fasta +baseCommand: [python, relabel-seqs.py] |