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| author | AndreaGuarracino | 2020-11-21 21:21:36 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2020-11-21 21:21:36 +0100 |
| commit | 3c35250eb6394ec8d0e28e4391ec23f2223345c8 (patch) | |
| tree | 017660f818af2e460c64259a5b82477beca1822f /workflows/pangenome-generate/pangenome-generate_spoa.cwl | |
| parent | 6814f9d74ca1d7fe4a7a08e5df0878557bd8e8f1 (diff) | |
| download | bh20-seq-resource-3c35250eb6394ec8d0e28e4391ec23f2223345c8.tar.gz bh20-seq-resource-3c35250eb6394ec8d0e28e4391ec23f2223345c8.tar.lz bh20-seq-resource-3c35250eb6394ec8d0e28e4391ec23f2223345c8.zip | |
generalized spoa workflow
Diffstat (limited to 'workflows/pangenome-generate/pangenome-generate_spoa.cwl')
| -rw-r--r-- | workflows/pangenome-generate/pangenome-generate_spoa.cwl | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/pangenome-generate_spoa.cwl b/workflows/pangenome-generate/pangenome-generate_spoa.cwl index b623054..a46524a 100644 --- a/workflows/pangenome-generate/pangenome-generate_spoa.cwl +++ b/workflows/pangenome-generate/pangenome-generate_spoa.cwl @@ -42,7 +42,7 @@ outputs: # outputSource: segment_components/colinear_components steps: dedup_and_sort_by_quality_and_len: - in: {readsFA: seqs} + in: {readsFA: seqs, reversed_sorting: 'true'} out: [sortedReadsFA, dups] run: sort_fasta_by_quality_and_len.cwl induceGraph: |