From 3c35250eb6394ec8d0e28e4391ec23f2223345c8 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Sat, 21 Nov 2020 21:21:36 +0100
Subject: generalized spoa workflow

---
 workflows/pangenome-generate/pangenome-generate_spoa.cwl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'workflows/pangenome-generate/pangenome-generate_spoa.cwl')

diff --git a/workflows/pangenome-generate/pangenome-generate_spoa.cwl b/workflows/pangenome-generate/pangenome-generate_spoa.cwl
index b623054..a46524a 100644
--- a/workflows/pangenome-generate/pangenome-generate_spoa.cwl
+++ b/workflows/pangenome-generate/pangenome-generate_spoa.cwl
@@ -42,7 +42,7 @@ outputs:
 #    outputSource: segment_components/colinear_components
 steps:
   dedup_and_sort_by_quality_and_len:
-    in: {readsFA: seqs}
+    in: {readsFA: seqs, reversed_sorting: 'true'}
     out: [sortedReadsFA, dups]
     run: sort_fasta_by_quality_and_len.cwl
   induceGraph:
-- 
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