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| author | Andrea Guarracino | 2020-06-18 18:08:27 +0200 |
|---|---|---|
| committer | GitHub | 2020-06-18 18:08:27 +0200 |
| commit | bbc563d1d6d45bcaa15d054f872bb3a448c94734 (patch) | |
| tree | 0bb6872a55cb88a3b398090442cab01035289683 /workflows/pangenome-generate/odgi-build.cwl | |
| parent | 1554fb6b4daf263f034d46a5f5b26ebcc3e69d22 (diff) | |
| download | bh20-seq-resource-bbc563d1d6d45bcaa15d054f872bb3a448c94734.tar.gz bh20-seq-resource-bbc563d1d6d45bcaa15d054f872bb3a448c94734.tar.lz bh20-seq-resource-bbc563d1d6d45bcaa15d054f872bb3a448c94734.zip | |
removed double sorting
The -s argument in odgi build do the same thing that odgi sort -p s does.
Diffstat (limited to 'workflows/pangenome-generate/odgi-build.cwl')
| -rw-r--r-- | workflows/pangenome-generate/odgi-build.cwl | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/odgi-build.cwl b/workflows/pangenome-generate/odgi-build.cwl index 0bd6a20..b594438 100644 --- a/workflows/pangenome-generate/odgi-build.cwl +++ b/workflows/pangenome-generate/odgi-build.cwl @@ -21,6 +21,6 @@ hints: listing: - entry: $(inputs.inputGFA) writable: true -arguments: [odgi, build, -g, $(inputs.inputGFA), -s, -o, -, +arguments: [odgi, build, -g, $(inputs.inputGFA), -o, -, {shellQuote: false, valueFrom: "|"}, odgi, sort, -i, -, -p, s, -o, $(inputs.inputGFA.nameroot).odgi] |