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| author | Peter Amstutz | 2020-05-11 10:38:15 -0400 |
|---|---|---|
| committer | GitHub | 2020-05-11 10:38:15 -0400 |
| commit | 55bab826fda6c6bc3190476f8e2c61e51ef092d6 (patch) | |
| tree | 02cc9ec2a79fa0c04ded33ccec009ebe03331f39 /workflows/pangenome-generate/minimap2.cwl | |
| parent | 20b446c79420b1d5c9742caed6713b7a3e5991f4 (diff) | |
| parent | ca7df27a6349e7b7009e1d1d5fec372106a072b1 (diff) | |
| download | bh20-seq-resource-55bab826fda6c6bc3190476f8e2c61e51ef092d6.tar.gz bh20-seq-resource-55bab826fda6c6bc3190476f8e2c61e51ef092d6.tar.lz bh20-seq-resource-55bab826fda6c6bc3190476f8e2c61e51ef092d6.zip | |
Merge pull request #49 from mr-c/add_pangenome_browser_prep
add pangenome browser prep
Diffstat (limited to 'workflows/pangenome-generate/minimap2.cwl')
| -rw-r--r-- | workflows/pangenome-generate/minimap2.cwl | 23 |
1 files changed, 0 insertions, 23 deletions
diff --git a/workflows/pangenome-generate/minimap2.cwl b/workflows/pangenome-generate/minimap2.cwl deleted file mode 100644 index bf8eb4c..0000000 --- a/workflows/pangenome-generate/minimap2.cwl +++ /dev/null @@ -1,23 +0,0 @@ -cwlVersion: v1.1 -class: CommandLineTool -inputs: - readsFA: File -outputs: - readsPAF: stdout -requirements: - InlineJavascriptRequirement: {} -hints: - DockerRequirement: - dockerPull: "quay.io/biocontainers/minimap2:2.17--h8b12597_1" - ResourceRequirement: - coresMin: 8 - coresMax: 32 - ramMin: $(15 * 1024) - outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20)) -stdout: $(inputs.readsFA.nameroot).paf -baseCommand: minimap2 -arguments: [-cx, asm20, - -w, "1", - -t, $(runtime.cores), - $(inputs.readsFA), - $(inputs.readsFA)] |