diff options
| author | Peter Amstutz | 2020-11-18 17:03:01 -0500 |
|---|---|---|
| committer | Peter Amstutz | 2020-11-18 17:05:12 -0500 |
| commit | 81daa0acc4c4a0827e1c1198f054f4d4dacd1daf (patch) | |
| tree | b1370c876394e36cb65947dbb37b094536d117ed /workflows/pangenome-generate/collect-seqs.cwl | |
| parent | ee8ea88dd6b372143c6b08f56856666ce2d0b622 (diff) | |
| download | bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.tar.gz bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.tar.lz bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.zip | |
Add query-to-gfa workflow
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/collect-seqs.cwl')
| -rw-r--r-- | workflows/pangenome-generate/collect-seqs.cwl | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/collect-seqs.cwl b/workflows/pangenome-generate/collect-seqs.cwl index 635108f..268a08c 100644 --- a/workflows/pangenome-generate/collect-seqs.cwl +++ b/workflows/pangenome-generate/collect-seqs.cwl @@ -8,7 +8,7 @@ requirements: arv:RuntimeConstraints: outputDirType: keep_output_dir DockerRequirement: - dockerPull: arvados/jobs:2.0.3 + dockerImageId: arvados-and-samtools WorkReuse: enableReuse: false ResourceRequirement: @@ -36,6 +36,7 @@ outputs: type: File outputBinding: glob: relabeledSeqs.fasta + secondaryFiles: [.fai] mergedMetadata: type: File outputBinding: |