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| author | Peter Amstutz | 2020-11-18 17:03:01 -0500 |
|---|---|---|
| committer | Peter Amstutz | 2020-11-18 17:05:12 -0500 |
| commit | 81daa0acc4c4a0827e1c1198f054f4d4dacd1daf (patch) | |
| tree | b1370c876394e36cb65947dbb37b094536d117ed /workflows/pangenome-generate/arvados-and-samtools-dockerfile | |
| parent | ee8ea88dd6b372143c6b08f56856666ce2d0b622 (diff) | |
| download | bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.tar.gz bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.tar.lz bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.zip | |
Add query-to-gfa workflow
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/arvados-and-samtools-dockerfile')
| -rw-r--r-- | workflows/pangenome-generate/arvados-and-samtools-dockerfile/1078ECD7.key | 30 | ||||
| -rw-r--r-- | workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile | 10 |
2 files changed, 40 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/arvados-and-samtools-dockerfile/1078ECD7.key b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/1078ECD7.key new file mode 100644 index 0000000..edc62f4 --- /dev/null +++ b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/1078ECD7.key @@ -0,0 +1,30 @@ +-----BEGIN PGP PUBLIC KEY BLOCK----- + +mQENBEzhgeoBCAChhoK1dqpWzNyDWqRGEvdFdkJaA9D2HRwKPfBfjAoePX6ZyrpA +ItlUsvt/8s/DRiTiPEFQR4S7VqocmU6whJc3gDEGyOM6b1NF873lIfSVwUoE42QE +a76dO8woOYgLUyxu2mKG+bJgGMumjBJt6ZOndYVjTYB/7sEeVxwmMVulfZe0s6zg +ut0+SoTYg2R36qIqeIcWllYt97sEYnyy1qXMis4/3IZnuWkS/frsPR3aeUI4W+o2 +NDN1kj49+LMe7Fb5b7jZY08rZbAWXi1rU1hQx4jC9RvYqlT4HNld4Bn7os1IvOOA +wNiR0oiVdiuDbBxcMvRPktxMrFVjowusRLq/ABEBAAG0PUN1cm92ZXJzZSwgSW5j +IEF1dG9tYXRpYyBTaWduaW5nIEtleSA8c3lzYWRtaW5AY3Vyb3ZlcnNlLmNvbT6J +ATgEEwECACIFAlNgYIECGwMGCwkIBwMCBhUIAgkKCwQWAgMBAh4BAheAAAoJEFcW +WREQeOzXPkEH/jQJDIYI1dxWcYiA+hczmpaZvN2/pc/kwIW/6a03+6zqmSNkebOE +TgoDILacSYc17hy20R1/rWyUstOMKcEgFDBlSehhHyl0f7q/w7d8Ais6MabzsPfx +IceJpsjUg87+BR7qWhgQ0sxmtIF2TKuTFLs+nkGsgSsiBOEF4NvHxuj3HD4y8F27 +HNqrkqwjLS8xJwwH5Gp2uMEVr1AXIH3iSRjJ8X124s8iEP97Q/3IazoYRf9/MCSm +QEx8KzxwDX6t4bW6O4D01K+e9gdkTY70dcMgJoqm5IsX7yxjEubiOunphtlJnZ9d +Oi1yBN5UM3pWKAdcfRj4rcfV9Simvpx9av+5AQ0ETOGB6gEIAMAA0HVMG0BbdnU7 +wWgl5eFdT0AUSrXK/WdcKqVEGGv+c68NETSHWZOJX7O46Eao4gY4cTYprVMBzxpY +/BtQSYLpE0HLvBc1fcFd61Yz4H/9rGSNY0GcIQEbOjbJY5mr8qFsQ1K/mAf3aUL3 +b6ni4sHVicRiRr0Gl4Ihorlskpfu1SHs/C5tvTSVNF9p4vtl5892y1yILQeVpcBs +NCR7MUpdS49xCpvnAWsDZX+ij6LTR3lzCm/ZLCg4gNuZkjgU9oqVfGkqysW7WZ8S +OLvzAwUw7i1EIFX8q6QdudGoezxz8m8OgZM1v8AFpYEKlhEPf1W0MSfaRDwrj866 +8nCLruEAEQEAAYkBHwQYAQIACQUCTOGB6gIbDAAKCRBXFlkREHjs199EB/4+p0G1 +3PHxt6rLWSCGXobDOu4ZOA/qnv0D/JhOLroFds5TzQv6vnS8eAkhCTjHVA+b58cm +kXpI0oYcD4ZP+KK1CHKq2rGfwou7HfAF+icnNqYkeBOkjjbCgkvBlcCInuAuU8JX +DZMkfFk52+eBKwTjS/J/fQp0vDru8bHLp98WgdRHWfJQ3mc3gz4A5sR6zhrGPW6/ +ssnROS4dC2Ohp35GpgN1KjD3EmEw5RoSBYlyrARCaMsivgIKMxGUEyFZWhuJt3N1 +2MTddRwz28hbmYCi+MzHYDbRv+cSyUDmvXaWhfkNKBepClBA1rTWBcldit5vvlqr +yPet6wIKrtLGhAqZ +=CLkG +-----END PGP PUBLIC KEY BLOCK----- diff --git a/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile new file mode 100644 index 0000000..6f857ac --- /dev/null +++ b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile @@ -0,0 +1,10 @@ +FROM debian:10 +ENV DEBIAN_FRONTEND noninteractive +RUN apt-get update -q +RUN apt-get install -yq --no-install-recommends gnupg +ADD 1078ECD7.key /tmp/ +RUN cat /tmp/1078ECD7.key | apt-key add - +RUN echo 'deb http://apt.arvados.org/ buster main' > /etc/apt/sources.list.d/apt.arvados.org-stable.list +RUN apt-get update -q && apt-get install -yq --no-install-recommends samtools python3-python-client +RUN rm -f /usr/bin/python && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python +RUN rm -f /usr/bin/python3 && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python3 |