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| author | Peter Amstutz | 2020-11-18 17:03:01 -0500 |
|---|---|---|
| committer | Peter Amstutz | 2020-11-18 17:05:12 -0500 |
| commit | 81daa0acc4c4a0827e1c1198f054f4d4dacd1daf (patch) | |
| tree | b1370c876394e36cb65947dbb37b094536d117ed /workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile | |
| parent | ee8ea88dd6b372143c6b08f56856666ce2d0b622 (diff) | |
| download | bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.tar.gz bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.tar.lz bh20-seq-resource-81daa0acc4c4a0827e1c1198f054f4d4dacd1daf.zip | |
Add query-to-gfa workflow
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
Diffstat (limited to 'workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile')
| -rw-r--r-- | workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile | 10 |
1 files changed, 10 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile new file mode 100644 index 0000000..6f857ac --- /dev/null +++ b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile @@ -0,0 +1,10 @@ +FROM debian:10 +ENV DEBIAN_FRONTEND noninteractive +RUN apt-get update -q +RUN apt-get install -yq --no-install-recommends gnupg +ADD 1078ECD7.key /tmp/ +RUN cat /tmp/1078ECD7.key | apt-key add - +RUN echo 'deb http://apt.arvados.org/ buster main' > /etc/apt/sources.list.d/apt.arvados.org-stable.list +RUN apt-get update -q && apt-get install -yq --no-install-recommends samtools python3-python-client +RUN rm -f /usr/bin/python && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python +RUN rm -f /usr/bin/python3 && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python3 |