From 81daa0acc4c4a0827e1c1198f054f4d4dacd1daf Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Wed, 18 Nov 2020 17:03:01 -0500 Subject: Add query-to-gfa workflow Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- .../arvados-and-samtools-dockerfile/Dockerfile | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile (limited to 'workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile') diff --git a/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile new file mode 100644 index 0000000..6f857ac --- /dev/null +++ b/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile @@ -0,0 +1,10 @@ +FROM debian:10 +ENV DEBIAN_FRONTEND noninteractive +RUN apt-get update -q +RUN apt-get install -yq --no-install-recommends gnupg +ADD 1078ECD7.key /tmp/ +RUN cat /tmp/1078ECD7.key | apt-key add - +RUN echo 'deb http://apt.arvados.org/ buster main' > /etc/apt/sources.list.d/apt.arvados.org-stable.list +RUN apt-get update -q && apt-get install -yq --no-install-recommends samtools python3-python-client +RUN rm -f /usr/bin/python && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python +RUN rm -f /usr/bin/python3 && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python3 -- cgit v1.2.3