diff options
| author | AndreaGuarracino | 2020-11-21 23:06:05 +0100 |
|---|---|---|
| committer | AndreaGuarracino | 2020-11-21 23:06:05 +0100 |
| commit | 1e9a735e84a8e89099b1de2ec66c56669caf6cc8 (patch) | |
| tree | 0beefb8e9f7a6321a5c8382b1be7b5b809c87d5e /workflows/pangenome-generate/abpoa.cwl | |
| parent | 862ae0235e3d1b105fa342cedf4aa59ae73d90c4 (diff) | |
| download | bh20-seq-resource-1e9a735e84a8e89099b1de2ec66c56669caf6cc8.tar.gz bh20-seq-resource-1e9a735e84a8e89099b1de2ec66c56669caf6cc8.tar.lz bh20-seq-resource-1e9a735e84a8e89099b1de2ec66c56669caf6cc8.zip | |
added abPOA workflow; typos
Diffstat (limited to 'workflows/pangenome-generate/abpoa.cwl')
| -rw-r--r-- | workflows/pangenome-generate/abpoa.cwl | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/abpoa.cwl b/workflows/pangenome-generate/abpoa.cwl new file mode 100644 index 0000000..fa9f157 --- /dev/null +++ b/workflows/pangenome-generate/abpoa.cwl @@ -0,0 +1,26 @@ +cwlVersion: v1.1 +class: CommandLineTool +inputs: + readsFA: File + script: + type: File + default: {class: File, location: relabel-seqs.py} +outputs: + abpoaGFA: + type: stdout +requirements: + InlineJavascriptRequirement: {} +hints: + DockerRequirement: + dockerPull: "quay.io/biocontainers/abpoa:1.0.5--hed695b0_0" + ResourceRequirement: + coresMin: 1 + ramMin: $(15 * 1024) + outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20)) +baseCommand: abpoa +stdout: $(inputs.readsFA.nameroot).O0.gfa +arguments: [ + $(inputs.readsFA), + -r 3, + -O, '0' +] |