diff options
| author | AndreaGuarracino | 2020-09-05 11:51:16 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-09-05 11:51:16 +0200 |
| commit | 556263eae40c2371f85b482494472e165ae4d1d5 (patch) | |
| tree | 4d1c7636f92c115ba441c5a2eaa58435a63d723a /workflows/fastq2fasta/bcftools-view-qc.cwl | |
| parent | c754aab95f47317228a07ccbe3818780aa22a52a (diff) | |
| download | bh20-seq-resource-556263eae40c2371f85b482494472e165ae4d1d5.tar.gz bh20-seq-resource-556263eae40c2371f85b482494472e165ae4d1d5.tar.lz bh20-seq-resource-556263eae40c2371f85b482494472e165ae4d1d5.zip | |
increased the quality filter threshold
Diffstat (limited to 'workflows/fastq2fasta/bcftools-view-qc.cwl')
| -rw-r--r-- | workflows/fastq2fasta/bcftools-view-qc.cwl | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/fastq2fasta/bcftools-view-qc.cwl b/workflows/fastq2fasta/bcftools-view-qc.cwl index 336f455..37caa19 100644 --- a/workflows/fastq2fasta/bcftools-view-qc.cwl +++ b/workflows/fastq2fasta/bcftools-view-qc.cwl @@ -8,7 +8,7 @@ baseCommand: bcftools arguments: - view - -i - - 'QUAL > 1 && GT="a"' + - 'QUAL > 10 && GT="a"' - -Oz - --threads=$(inputs.threads) - $(inputs.bcf) |