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| author | Peter Amstutz | 2020-06-22 18:23:40 +0000 |
|---|---|---|
| committer | Peter Amstutz | 2020-06-22 18:25:45 +0000 |
| commit | 76883d02e6073f990ea980dad1f8cf21121255ff (patch) | |
| tree | 0fe93dadf69cb5c0c09ff9b98fe18e5baacdd6c4 /workflows/fastq2fasta/bcftools-view-qc.cwl | |
| parent | fcf300d0df032f569f21b3ef75a78bb163f55da0 (diff) | |
| download | bh20-seq-resource-76883d02e6073f990ea980dad1f8cf21121255ff.tar.gz bh20-seq-resource-76883d02e6073f990ea980dad1f8cf21121255ff.tar.lz bh20-seq-resource-76883d02e6073f990ea980dad1f8cf21121255ff.zip | |
Adjust QC filter and relabel output sequence with sample_id
Diffstat (limited to 'workflows/fastq2fasta/bcftools-view-qc.cwl')
| -rw-r--r-- | workflows/fastq2fasta/bcftools-view-qc.cwl | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/fastq2fasta/bcftools-view-qc.cwl b/workflows/fastq2fasta/bcftools-view-qc.cwl index 477c596..336f455 100644 --- a/workflows/fastq2fasta/bcftools-view-qc.cwl +++ b/workflows/fastq2fasta/bcftools-view-qc.cwl @@ -8,7 +8,7 @@ baseCommand: bcftools arguments: - view - -i - - 'QUAL>1 && (GT="AA" || GT="Aa")' + - 'QUAL > 1 && GT="a"' - -Oz - --threads=$(inputs.threads) - $(inputs.bcf) |