aboutsummaryrefslogtreecommitdiff
path: root/scripts
diff options
context:
space:
mode:
authorAndreaGuarracino2020-07-07 23:01:48 +0200
committerAndreaGuarracino2020-07-07 23:01:48 +0200
commitf77e86dbb84baf8add3d7a71f8f06fb44a99507b (patch)
tree32d908d37f88a03614e8e866b3d5644a959c378b /scripts
parent9b1457763c08028179b0987d385d1fe879062b64 (diff)
downloadbh20-seq-resource-f77e86dbb84baf8add3d7a71f8f06fb44a99507b.tar.gz
bh20-seq-resource-f77e86dbb84baf8add3d7a71f8f06fb44a99507b.tar.lz
bh20-seq-resource-f77e86dbb84baf8add3d7a71f8f06fb44a99507b.zip
fix missing authors #91
Diffstat (limited to 'scripts')
-rwxr-xr-xscripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py4
1 files changed, 3 insertions, 1 deletions
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index 44308ed..cb94787 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -173,7 +173,9 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
# submitter info
GBSeq_references = GBSeq.find('GBSeq_references')
if GBSeq_references is not None:
- info_for_yaml_dict['submitter']['authors'] = ["{}".format(x.text) for x in GBSeq_references.iter('GBAuthor')]
+ author_list = ["{}".format(x.text) for x in GBSeq_references.iter('GBAuthor')]
+ if len(author_list) > 0:
+ info_for_yaml_dict['submitter']['authors'] = author_list
GBReference = GBSeq_references.find('GBReference')
if GBReference is not None: