diff options
author | AndreaGuarracino | 2020-06-22 23:27:19 +0200 |
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committer | AndreaGuarracino | 2020-06-22 23:27:19 +0200 |
commit | 75ad6744aa8edb7de92a427c55405d9331879ad4 (patch) | |
tree | 5e991e5a3992c8fd8c878f18788f2a6939ddf756 /scripts | |
parent | 5bd991fe5f048b2c4b2c23c6149c1bd789d3bdbc (diff) | |
download | bh20-seq-resource-75ad6744aa8edb7de92a427c55405d9331879ad4.tar.gz bh20-seq-resource-75ad6744aa8edb7de92a427c55405d9331879ad4.tar.lz bh20-seq-resource-75ad6744aa8edb7de92a427c55405d9331879ad4.zip |
moved the genbank script in his specific directory
Diffstat (limited to 'scripts')
-rwxr-xr-x | scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py (renamed from scripts/from_genbank_to_fasta_and_yaml.py) | 2 | ||||
-rw-r--r-- | scripts/sequences.acc | 1731 |
2 files changed, 1 insertions, 1732 deletions
diff --git a/scripts/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 6216340..d76f56b 100755 --- a/scripts/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -22,7 +22,7 @@ num_ids_for_request = 100 dir_metadata = 'metadata_from_nuccore' dir_fasta_and_yaml = 'fasta_and_yaml' -dir_dict_ontology_standardization = 'dict_ontology_standardization/' +dir_dict_ontology_standardization = '../dict_ontology_standardization/' today_date = date.today().strftime("%Y.%m.%d") path_ncbi_virus_accession = 'sequences.{}.acc'.format(today_date) diff --git a/scripts/sequences.acc b/scripts/sequences.acc deleted file mode 100644 index 697d868..0000000 --- a/scripts/sequences.acc +++ /dev/null @@ -1,1731 +0,0 @@ -NC_045512 -MT394528 -MT394529 -MT394530 -MT394531 -MT394864 -MT396241 -MT396242 -MT396243 -MT396244 -MT396245 -MT396246 -MT396247 -MT396248 -MT396266 -MT380726 -MT380727 -MT380728 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