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authorPjotr Prins2020-05-12 14:45:10 -0500
committerPjotr Prins2020-05-12 14:45:10 -0500
commit0db3674b14ee441851999cab091a487aa5286550 (patch)
treef453ea4de4f13952edb0357fef1f375ae14f0fc6 /scripts/update_virtuoso
parent5348517df7f62ce81d33e388f70e97cba680f679 (diff)
downloadbh20-seq-resource-0db3674b14ee441851999cab091a487aa5286550.tar.gz
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Virtuoso uploader: does not delete graph yet
Diffstat (limited to 'scripts/update_virtuoso')
-rwxr-xr-xscripts/update_virtuoso/check_for_updates.py24
1 files changed, 10 insertions, 14 deletions
diff --git a/scripts/update_virtuoso/check_for_updates.py b/scripts/update_virtuoso/check_for_updates.py
index 1c7813a..0f84fb1 100755
--- a/scripts/update_virtuoso/check_for_updates.py
+++ b/scripts/update_virtuoso/check_for_updates.py
@@ -9,20 +9,22 @@
import requests
import time
+import sys
+
+assert(len(sys.argv)==4)
+fn = sys.argv[1]
+user = sys.argv[2]
+pwd = sys.argv[3]
+
def upload(fn):
# Upload into Virtuoso using CURL
# cmd = "curl -X PUT --digest -u dba:dba -H Content-Type:text/turtle -T metadata.ttl -G http://localhost:8890/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph".split(" ")
- print("DELETE "+fn)
- cmd = ("curl --digest --user dba:dba --verbose --url -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph -X DELETE" % pwd).split(" ")
- print(cmd)
- p = subprocess.Popen(cmd)
- output = p.communicate()[0]
- print(output)
- assert(p.returncode == 0)
+ # print("DELETE "+fn)
+ # cmd = ("curl --digest --user dba:%s --verbose --url -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph -X DELETE" % pwd).split(" ")
print("UPLOAD "+fn)
- cmd = ("curl -X PUT --digest -u dba:%s -H Content-Type:text/turtle -T %s -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph" % pwd, fn ).split(" ")
+ cmd = ("curl -X PUT --digest -u dba:%s -H Content-Type:text/turtle -T %s -G http://sparql.genenetwork.org/sparql-graph-crud-auth --data-urlencode graph=http://covid-19.genenetwork.org/graph" % (pwd, fn) ).split(" ")
print(cmd)
p = subprocess.Popen(cmd)
output = p.communicate()[0]
@@ -43,12 +45,6 @@ t_stamp = time.strptime(last_modified_str,"%a, %d %b %Y %H:%M:%S %Z" )
print(t_stamp)
# OK, it works, now check last stored value
-import sys
-assert(len(sys.argv)==4)
-fn = sys.argv[1]
-user = sys.argv[2]
-pwd = sys.argv[3]
-
import os.path
stamp = None
if os.path.isfile(fn):