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| author | Pjotr Prins | 2020-07-17 12:05:53 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2020-07-17 12:08:43 +0100 |
| commit | 6ade3c1d47a83f0ed52a4efe287017b6a0fcc44e (patch) | |
| tree | 00f28ae6d9e973098aaee08534aa8414d54a957b /scripts/submit_ebi/example/sample.xml | |
| parent | 4f3469e2d5395526c0376688ded4340a4834677d (diff) | |
| download | bh20-seq-resource-6ade3c1d47a83f0ed52a4efe287017b6a0fcc44e.tar.gz bh20-seq-resource-6ade3c1d47a83f0ed52a4efe287017b6a0fcc44e.tar.lz bh20-seq-resource-6ade3c1d47a83f0ed52a4efe287017b6a0fcc44e.zip | |
Preparing for EBI submission
Diffstat (limited to 'scripts/submit_ebi/example/sample.xml')
| -rw-r--r-- | scripts/submit_ebi/example/sample.xml | 68 |
1 files changed, 68 insertions, 0 deletions
diff --git a/scripts/submit_ebi/example/sample.xml b/scripts/submit_ebi/example/sample.xml new file mode 100644 index 0000000..694c471 --- /dev/null +++ b/scripts/submit_ebi/example/sample.xml @@ -0,0 +1,68 @@ +<?xml version="1.0" encoding="UTF-8"?> +<SAMPLE_SET> + <SAMPLE alias="PubSeqSam0001" center_name="PubSeq01"> + <TITLE>human gastric microbiota, mucosal</TITLE> + <SAMPLE_NAME> + <TAXON_ID>1284369</TAXON_ID> + <SCIENTIFIC_NAME>stomach metagenome</SCIENTIFIC_NAME> + <COMMON_NAME></COMMON_NAME> + </SAMPLE_NAME> + <SAMPLE_ATTRIBUTES> + <SAMPLE_ATTRIBUTE> + <TAG>investigation type</TAG> + <VALUE>mimarks-survey</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>sequencing method</TAG> + <VALUE>pyrosequencing</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>collection date</TAG> + <VALUE>2010</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>host body site</TAG> + <VALUE>Mucosa of stomach</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>human-associated environmental package</TAG> + <VALUE>human-associated</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>geographic location (latitude)</TAG> + <VALUE>1.81</VALUE> + <UNITS>DD</UNITS> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>geographic location (longitude)</TAG> + <VALUE>-78.76</VALUE> + <UNITS>DD</UNITS> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>geographic location (country and/or sea)</TAG> + <VALUE>Colombia</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>geographic location (region and locality)</TAG> + <VALUE>Tumaco</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>environment (biome)</TAG> + <VALUE>coast</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>environment (feature)</TAG> + <VALUE>human-associated habitat</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>environment (material)</TAG> + <VALUE>gastric biopsy</VALUE> + </SAMPLE_ATTRIBUTE> + <SAMPLE_ATTRIBUTE> + <TAG>ENA-CHECKLIST</TAG> + <VALUE>ERC000011</VALUE> + </SAMPLE_ATTRIBUTE> + </SAMPLE_ATTRIBUTES> + </SAMPLE> +</SAMPLE_SET> + |